Parental gene:

ENSCJAG00000019334

Aliases:None
Description:None
Organism:Marmoset (Callithrix jacchus)
Coordinates:2:68943298..68959993(-)


>ENSCJAG00000019334
ATGGAAGATTCGATGGACATGGACATGAGCCCCCTGAGGCCCCAGAACTATCTTTTCGGTTGTGAACTAAAGGCCGACAA
AGATTATCACTTTAAGGTGGATAATGATGAAAATGAGCACCAGTTATCTTTAAGAACGGTCAGTTTAGGAGCTGGTGCAA
AGGACGAATTGCACATTGTTGAAGCAGAGGCAATGAATTACGAAGGCAGTCCAATTAAAGTAACACTGGCAACTTTGAAA
ATGTCTGTACAGCCTACGGTTTCCCTTGGGGGCTTTGAAATAACACCACCAGTGGTCTTACGATTGAAGTGTGGTTCAGG
GCCGGTACATATCAGTGGACAGCACTTAGTAGCTGTGGAGGAAGATGCAGAGTCAGAAGATGAGGAGGAGGAGGATGTGA
AACTCTTAAGTATGTCTGGAAAGCGGTCTGCCCCTGGAGGTGGTAGCAAGGTTCCACAGAAAAAAGTAAAACTTGCTGCT
GATGAAGATGATGATGACGATGAAGATGATGATGATGATGATGATGAAGATGATGATGATGATGATTTCGATGATGAGGA
AACTGAAGAAAAAGTGCCAGTGAAGAAATCTATACGCGATACTCCAGCCAAAAATGCACAAAAGTCAAATCAGAATGGAA
AAGACTCAAAACCATCATCAACACCAAGATCAAAAGGACAAGAATCCTTCAAAAAACAGGAAAAAACTCCTAAAACACCA
AAAGGACCTAGTTCTGTAGAAGACATTAAAGCAAAAATGCAAGCAAGTATAGAAAAAGGTGGTTCTCTTCCCAAAGTGGA
AGCCAAGTTCATCAATTATGTGAAGAATTGCTTCCGGATGACTGACCAGGAGGCTATTCAAGATCTCTGGGTGGAGGAAG
TCTCTTTAAGAAAATAG

Library Parental gene expression (RPM)
SRP051959_spleen 120 .13 RPM
SRP051959_skeletal_muscle 89 .78 RPM
SRP051959_lymph_node 125 .98 RPM
SRP051959_lung 107 .02 RPM
SRP051959_liver 110 .79 RPM
SRP051959_kidney 119 .21 RPM
SRP051959_heart 88 .32 RPM
SRP051959_colon 103 .02 RPM



Species Parental gene accession Homology type Retrogenes number
Ailuropoda melanoleuca ENSAMEG00000003910 possible_ortholog 1 retrogene
retro_amel_983,
Bos taurus ENSBTAG00000015316 possible_ortholog 2 retrogenes
retro_btau_538, retro_btau_56,
Canis familiaris ENSCAFG00000016912 possible_ortholog 3 retrogenes
retro_cfam_22, retro_cfam_286, retro_cfam_900,
Callithrix jacchus ENSCJAG00000017650 within_species_paralog 2 retrogenes
retro_cjac_2491, retro_cjac_3052,
Equus caballus ENSECAG00000021950 possible_ortholog 4 retrogenes
retro_ecab_1016, retro_ecab_1100, retro_ecab_393, retro_ecab_544,
Felis catus ENSFCAG00000030268 possible_ortholog 3 retrogenes
retro_fcat_156, retro_fcat_376, retro_fcat_720,
Homo sapiens ENSG00000181163 possible_ortholog 30 retrogenes
retro_hsap_1275, retro_hsap_129, retro_hsap_1526, retro_hsap_1580, retro_hsap_1593, retro_hsap_1621, retro_hsap_2226, retro_hsap_2375, retro_hsap_2478, retro_hsap_2856, retro_hsap_2862, retro_hsap_3355, retro_hsap_3460, retro_hsap_3609, retro_hsap_3636, retro_hsap_3718, retro_hsap_3776, retro_hsap_3808, retro_hsap_3817, retro_hsap_3822, retro_hsap_3962, retro_hsap_4666, retro_hsap_4753, retro_hsap_4785, retro_hsap_614, retro_hsap_638, retro_hsap_690, retro_hsap_717, retro_hsap_785, retro_hsap_961,
Gorilla gorilla ENSGGOG00000007220 possible_ortholog 12 retrogenes
retro_ggor_1543, retro_ggor_1660, retro_ggor_1976, retro_ggor_2453, retro_ggor_2454, retro_ggor_2539, retro_ggor_2559, retro_ggor_2571, retro_ggor_2681, retro_ggor_2959, retro_ggor_560, retro_ggor_591,
Macaca mulatta ENSMMUG00000015781 possible_ortholog 1 retrogene
retro_mmul_203,
Mus musculus ENSMUSG00000057113 possible_ortholog 5 retrogenes
retro_mmus_1301, retro_mmus_1798, retro_mmus_3131, retro_mmus_539, retro_mmus_550,
Oryctolagus cuniculus ENSOCUG00000011117 possible_ortholog 1 retrogene
retro_ocun_412,
Otolemur garnettii ENSOGAG00000013616 possible_ortholog 14 retrogenes
retro_ogar_1554, retro_ogar_1623, retro_ogar_1671, retro_ogar_1776, retro_ogar_2015, retro_ogar_2168, retro_ogar_2207, retro_ogar_2461, retro_ogar_2605, retro_ogar_2832, retro_ogar_3037, retro_ogar_536, retro_ogar_595, retro_ogar_614,
Pongo abelii ENSPPYG00000016037 possible_ortholog 7 retrogenes
retro_pabe_2405, retro_pabe_3072, retro_pabe_3261, retro_pabe_3627, retro_pabe_3699, retro_pabe_486, retro_pabe_532,
Pteropus vampyrus ENSPVAG00000002211 possible_ortholog 1 retrogene
retro_pvam_851,

# RetrogeneDB ID Identity (%) Coverage (%) ORF conservation Expression evidence RDV
1. retro_cjac_838 97.53 54.73
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2. retro_cjac_1559 94.97 59.55
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3. retro_cjac_1682 74.59 67.04
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4. retro_cjac_1696 93.71 53.36
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5. retro_cjac_1733 89.31 53.72
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6. retro_cjac_2075 95.62 53.72
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7. retro_cjac_2351 100.00 53.36
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8. retro_cjac_2368 93.08 60.92
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9. retro_cjac_2533 78.48 53.04
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10. retro_cjac_2605 81.61 58.45
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11. retro_cjac_3270 82.35 51.35
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12. retro_cjac_3416 69.47 84.29
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13. retro_cjac_4117 79.04 62.45
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Download FASTA sequences of all ENSCJAG00000019334 retrocopies