Parental gene:

NPM1, ENSECAG00000021950

Aliases:None
Description:nucleophosmin (nucleolar phosphoprotein B23, numatrin) [Source:HGNC Symbol;Acc:7910]
Organism:Horse (Equus caballus)
Coordinates:14:9849997..9864920(-)


>ENSECAG00000021950
ATGGAAGATTCGATGGACATGGACATGAGCCCCCTGAGGCCCCAGAACTATCTTTTCGGTTGTGAACTAAAGGCTGACAA
AGATTATCACTTTAAGGTGGATAATGATGAAAATGAGCACCAGTTATCATTAAGAACGGTCAGTTTAGGGGCTGGTGCAA
AGGATGAATTGCACATTGTGGAAGCAGAGGCAATGAATTATGAAGGCAGTCCAATTAAAGTGACACTGGCAACTTTGAAA
ATGTCTGTACAGCCCACGGTTTCCCTTGGGGGCTTTGAAATAACGCCACCTGTGGTCTTACGATTGAAGTGTGGTTCAGG
GCCAGTGCATATTAGTGGACAGCACTTAGTAGCTGTGGAGGAAGATGCAGAATCAGAAGATGAAGAGGAGGAGGATGTGA
AACTCCTGAGTATATCTGGAAAGCGTTCTGCCCCTGGAAGTGGTAGCAAGGTTCCACAGAAAAAAGTAAAACTTGCTGCC
GATGAAGATGATGATGACGAAGATGATGACGAAGATGATGATGAAGATGATGATGATGATGATTTTGATGAGGAGGAAGC
TGAAGAAAAAGCTCCAGTAAAGAAATCTATACGAGATACTCCAGCCAAAAATGCACAAAAGTCAAACCAGAATGGAAAAG
ACTCCAAACCGTCAACGCCAAGATCAAAAGGTCAAGAATCCTTCAAAAAACAGGAAAAAACTCCTAAAACACCAAAAGGA
CCTAGTTCTGTAGAAGACATTAAAGCAAAAATGCAAGCAAGTATAGAAAAAGGTGGTTCTCTTCCCAAAGTGGAAGCCAA
GTTCATCAATTATGTGAAGAATTGCTTCCGGATGACTGACCAGGAGGCTATTCAAGATCTCTGGCAGTGGAGGAAGTCTC
TTTAA

Library Parental gene expression (RPM)
SRP021940_synovial_membrane 57 .62 RPM
SRP021940_embryo 208 .67 RPM
SRP021940_cerebellum 51 .78 RPM
SRP021940_testis 45 .59 RPM
SRP021940_placental_villous 73 .32 RPM
SRP021940_articular_cartilage 112 .98 RPM



Species Parental gene accession Homology type Retrogenes number
Ailuropoda melanoleuca ENSAMEG00000003910 ortholog_one2many 1 retrogene
retro_amel_983,
Bos taurus ENSBTAG00000015316 ortholog_one2many 2 retrogenes
retro_btau_538, retro_btau_56,
Canis familiaris ENSCAFG00000016912 ortholog_one2many 3 retrogenes
retro_cfam_22, retro_cfam_286, retro_cfam_900,
Callithrix jacchus ENSCJAG00000019334 possible_ortholog 13 retrogenes
retro_cjac_1559, retro_cjac_1682, retro_cjac_1696, retro_cjac_1733, retro_cjac_2075, retro_cjac_2351, retro_cjac_2368, retro_cjac_2533, retro_cjac_2605, retro_cjac_3270, retro_cjac_3416, retro_cjac_4117, retro_cjac_838,
Felis catus ENSFCAG00000030268 possible_ortholog 3 retrogenes
retro_fcat_156, retro_fcat_376, retro_fcat_720,
Gorilla gorilla ENSGGOG00000007220 possible_ortholog 12 retrogenes
retro_ggor_1543, retro_ggor_1660, retro_ggor_1976, retro_ggor_2453, retro_ggor_2454, retro_ggor_2539, retro_ggor_2559, retro_ggor_2571, retro_ggor_2681, retro_ggor_2959, retro_ggor_560, retro_ggor_591,
Macaca mulatta ENSMMUG00000015781 possible_ortholog 1 retrogene
retro_mmul_203,
Mus musculus ENSMUSG00000057113 possible_ortholog 5 retrogenes
retro_mmus_1301, retro_mmus_1798, retro_mmus_3131, retro_mmus_539, retro_mmus_550,
Otolemur garnettii ENSOGAG00000013616 possible_ortholog 14 retrogenes
retro_ogar_1554, retro_ogar_1623, retro_ogar_1671, retro_ogar_1776, retro_ogar_2015, retro_ogar_2168, retro_ogar_2207, retro_ogar_2461, retro_ogar_2605, retro_ogar_2832, retro_ogar_3037, retro_ogar_536, retro_ogar_595, retro_ogar_614,
Pongo abelii ENSPPYG00000016037 possible_ortholog 7 retrogenes
retro_pabe_2405, retro_pabe_3072, retro_pabe_3261, retro_pabe_3627, retro_pabe_3699, retro_pabe_486, retro_pabe_532,

# RetrogeneDB ID Identity (%) Coverage (%) ORF conservation Expression evidence RDV
1. retro_ecab_393 90.00 54.42
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2. retro_ecab_544 80.65 52.04
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3. retro_ecab_1016 81.76 57.82
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4. retro_ecab_1100 84.38 54.42
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Download FASTA sequences of all ENSECAG00000021950 retrocopies