Parental gene:

HN1, ENSCJAG00000014553

Aliases:None
Description:None
Organism:Marmoset (Callithrix jacchus)
Coordinates:5:124351335..124367248(-)


>ENSCJAG00000014553
ATGACCACAACCACCACCTTCAAGGGAGTCGACCCCAACAGCAGGAATAGCTCCCGGGTTTTGCGGCCTCCAGGTGGTGG
ATCCAATTTTTCATTAGGTTTTGATGAACCAACAGAACAACCTGTGAGGAAGAACAAAATGGCCTCTAATATCTTTGGGA
CACCTGAGGAAAATCAGGCTTCTTGGGCCAAGTCGGCAGGTGCCAAGTCTAGTGGTGGCAGGGAAGACTTAGAGTCATCT
GGACTGCAGAGAAGGAACTCCTCAGAAGCAAGCTCCGGAGACTTCTTAGATCTGAAGAAAATGTGGACACAGATTTGCAA
GGCAGCCTGGGGCAGAGTGAAGAGAAGCCTGTGCCTGCCGCGCCTGTGCCCAGCCCGGTGGCCCCGGCCCCAGTGCCATC
CAGGAGAAATCCCCCTGGTGGCAAGTCCAGCCTTGTCTTGGGTTAACTCTTACTGTCCTGAACGCTGTCGTTTTGTTTGT
TTCCTTCATGCTTGTGAACTGCACAACTTGAGCCTGACTGTACATCTCTTGGATTTGTTTCATTAA

Library Parental gene expression (RPM)
SRP051959_spleen 6 .45 RPM
SRP051959_skeletal_muscle 6 .73 RPM
SRP051959_lymph_node 9 .63 RPM
SRP051959_lung 4 .49 RPM
SRP051959_liver 2 .58 RPM
SRP051959_kidney 1 .82 RPM
SRP051959_heart 1 .21 RPM
SRP051959_colon 9 .07 RPM



Species Parental gene accession Homology type Retrogenes number
Echinops telfairi ENSETEG00000013294 ortholog_one2one 1 retrogene
retro_etel_89,
Homo sapiens ENSG00000189159 ortholog_one2one 1 retrogene
retro_hsap_2343,
Gorilla gorilla ENSGGOG00000013996 ortholog_one2one 1 retrogene
retro_ggor_1780,
Mustela putorius furo ENSMPUG00000013971 ortholog_one2one 1 retrogene
retro_mputfur_1200,
Mus musculus ENSMUSG00000020737 ortholog_one2one 6 retrogenes
retro_mmus_1096, retro_mmus_2442, retro_mmus_2574, retro_mmus_3706, retro_mmus_864, retro_mmus_934,
Nomascus leucogenys ENSNLEG00000000610 ortholog_one2one 1 retrogene
retro_nleu_348,
Oryctolagus cuniculus ENSOCUG00000002950 ortholog_one2one 2 retrogenes
retro_ocun_1647, retro_ocun_457,
Ochotona princeps ENSOPRG00000010887 ortholog_one2one 2 retrogenes
retro_opri_537, retro_opri_88,
Pan troglodytes ENSPTRG00000024246 ortholog_one2one 1 retrogene
retro_ptro_1715,
Rattus norvegicus ENSRNOG00000003661 ortholog_one2many 2 retrogenes
retro_rnor_1794, retro_rnor_454,
Ictidomys tridecemlineatus ENSSTOG00000015171 ortholog_one2one 1 retrogene
retro_itri_1449,

# RetrogeneDB ID Identity (%) Coverage (%) ORF conservation Expression evidence RDV
1. retro_cjac_2715 74.26 54.14
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Download FASTA sequences of all ENSCJAG00000014553 retrocopies