Parental gene:

SSU72, ENSCJAG00000010957

Aliases:None
Description:SSU72 RNA polymerase II CTD phosphatase homolog (S. cerevisiae) [Source:HGNC Symbol;Acc:25016]
Organism:Marmoset (Callithrix jacchus)
Coordinates:7:35997974..36028992(-)


>ENSCJAG00000010957
ATGCCGTCGTCCCCGCTGCGGGTGGCGGTGGTGTGCTCGAGCAACCAGAACCGGAGCATGGAGGCGCACAATATCCTCAG
CAAACGGGGATTCAGTGTCCGATCCTTTGGAACAGGGACTCACGTGAAGCTTCCAGGACCAGCTCCGGACAAGCCCAATG
TTTACGATTTCAAAACCACATATGACCAGATGTACAATGATCTTCTTAGGAAAGACAAAGAACTCTATACACAAAACGGC
ATTTTGCACATGCTGGACAGAAATAAGAGAATCAAGCCCCGGCCGGAAAGGTTCCAGAACTGCAAAGACCTGTTTGATCT
GATCCTCACTTGTGAAGAGAGAGTGTACGATCAGGTGGTGGAAGATCTGAATTCCAGAGAACAGGAGACCTGCCAGCCCG
TGCACGTGGTCAACGTGGACATCCAGGACAACCATGAGGAGGCCACCCTGGGGGCATTTCTCATCTGTGAGCTCTGCCAG
TGTATCCAGCACACGGAGGACATGGAGAACGAGATTGACGAGCTACTTCAGGAGTTTGAGGAGAAGAGCGGGCGCACCTT
CCTGCACACTGTCTGCTTCTACTGA

Library Parental gene expression (RPM)
SRP051959_spleen 22 .10 RPM
SRP051959_skeletal_muscle 20 .27 RPM
SRP051959_lymph_node 22 .35 RPM
SRP051959_lung 19 .00 RPM
SRP051959_liver 14 .01 RPM
SRP051959_kidney 17 .73 RPM
SRP051959_heart 15 .75 RPM
SRP051959_colon 13 .96 RPM



Species Parental gene accession Homology type Retrogenes number
Ailuropoda melanoleuca ENSAMEG00000013736 possible_ortholog 3 retrogenes
retro_amel_1930, retro_amel_292, retro_amel_84,
Canis familiaris ENSCAFG00000019254 ortholog_one2one 2 retrogenes
retro_cfam_185, retro_cfam_42,
Cavia porcellus ENSCPOG00000002238 ortholog_one2one 2 retrogenes
retro_cpor_83, retro_cpor_909,
Dipodomys ordii ENSDORG00000011714 possible_ortholog 1 retrogene
retro_dord_433,
Homo sapiens ENSG00000160075 ortholog_one2one 8 retrogenes
retro_hsap_3778, retro_hsap_4741, retro_hsap_747, retro_hsap_748, retro_hsap_749, retro_hsap_841, retro_hsap_842, retro_hsap_843,
Gorilla gorilla ENSGGOG00000004421 ortholog_one2one 1 retrogene
retro_ggor_206,
Loxodonta africana ENSLAFG00000002076 ortholog_one2one 4 retrogenes
retro_lafr_1153, retro_lafr_1154, retro_lafr_1155, retro_lafr_400,
Macropus eugenii ENSMEUG00000015170 ortholog_one2one 1 retrogene
retro_meug_1253,
Myotis lucifugus ENSMLUG00000016517 ortholog_one2one 2 retrogenes
retro_mluc_292, retro_mluc_371,
Macaca mulatta ENSMMUG00000001551 ortholog_one2one 1 retrogene
retro_mmul_159,
Monodelphis domestica ENSMODG00000006616 ortholog_one2one 3 retrogenes
retro_mdom_16, retro_mdom_1997, retro_mdom_487,
Mustela putorius furo ENSMPUG00000014394 possible_ortholog 2 retrogenes
retro_mputfur_108, retro_mputfur_1408,
Mus musculus ENSMUSG00000029038 ortholog_one2one 1 retrogene
retro_mmus_1317,
Otolemur garnettii ENSOGAG00000024430 ortholog_one2one 2 retrogenes
retro_ogar_124, retro_ogar_13,
Pongo abelii ENSPPYG00000002000 ortholog_one2one 1 retrogene
retro_pabe_53,
Pan troglodytes ENSPTRG00000000034 ortholog_one2one 16 retrogenes
retro_ptro_2560, retro_ptro_2963, retro_ptro_3016, retro_ptro_3017, retro_ptro_3018, retro_ptro_3019, retro_ptro_3020, retro_ptro_3021, retro_ptro_3022, retro_ptro_3023, retro_ptro_3024, retro_ptro_3025, retro_ptro_3026, retro_ptro_3156, retro_ptro_531, retro_ptro_532,
Pteropus vampyrus ENSPVAG00000017695 ortholog_one2one 4 retrogenes
retro_pvam_11, retro_pvam_1151, retro_pvam_272, retro_pvam_767,
Rattus norvegicus ENSRNOG00000017829 ortholog_one2one 2 retrogenes
retro_rnor_1169, retro_rnor_2766,
Sus scrofa ENSSSCG00000003348 ortholog_one2one 2 retrogenes
retro_sscr_1179, retro_sscr_38,
Ictidomys tridecemlineatus ENSSTOG00000002960 ortholog_one2one 4 retrogenes
retro_itri_1055, retro_itri_1352, retro_itri_1496, retro_itri_99,
Tursiops truncatus ENSTTRG00000017051 ortholog_one2one 2 retrogenes
retro_ttru_1264, retro_ttru_1265,

# RetrogeneDB ID Identity (%) Coverage (%) ORF conservation Expression evidence RDV
1. retro_cjac_37 80.41 100.00
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2. retro_cjac_1640 82.14 56.70
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3. retro_cjac_2335 86.82 65.98
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Download FASTA sequences of all ENSCJAG00000010957 retrocopies