RetrogeneDB ID:

retro_pvam_272

Retrocopy
location
Organism:Megabat (Pteropus vampyrus)
Coordinates:GeneScaffold_2271:500273..500849(-)
Located in intron of:None
Retrocopy
information
Ensembl ID:None
Aliases:None
Status:NOVEL
Parental gene
information
Parental gene summary:
Parental gene symbol:SSU72
Ensembl ID:ENSPVAG00000017695
Aliases:None
Description:SSU72 RNA polymerase II CTD phosphatase homolog (S. cerevisiae) [Source:HGNC Symbol;Acc:25016]


Retrocopy-Parental alignment summary:






>retro_pvam_272
ATGCCGACCCCACCGCTGCGGGTGGCTGTGGTGTGCTCCAGCAACCAGAACCGGAGCATGGAGGCACACAATATCCTAAG
CAAACGGGGATTCAGTGTCCGGTCCTTTGGAACAGGAACTCACGTGAAGCTTCCAGGGCCAGCACCCGACAAGCCAAATG
TTTATGATTTCAAGACCACATATGAACAGATGTACAATGATCTCCTTAGGAAAGACAAGGAACTCTACACGCAGAATGGC
ATTTTGCATATGTTGGACAGAAATAAGCGAATCAAGCCCGGACCAGAAAGGTTCCAAGACTGCAAGGACCTGTTCGACCT
GATTCTCACCTGCGAGGAGAGAGTGTATGACCAGGTGGTGGAAGATCTGAATTCCAGAGAGCAGGAGACCTGCCAGCCGG
TGCACGTTATCAACGTGGACATCCAAGACAACCACGAAGAGGCCACCTTGGGGGCGTTCCTCATTTGTGAGCTCTGCCAA
TGCATTCAGCACACGGAGGACATGGAGAATGAGATCGATGAGCTGCTGCAGGAGTTCGAGGAGAAGAGCGGCAGGGCCTT
CCTGCACACTGTCTGC

ORF - retro_pvam_272 Open Reading Frame is conserved.
Retrocopy - Parental Gene Alignment summary:
Percent Identity: 97.4 %
Parental protein coverage: 100. %
Number of stop codons detected: 0
Number of frameshifts detected 0


Retrocopy - Parental Gene Alignment:

ParentalMPSLPLRVAVVCSSNQNRSMEAHNILSKRGFSVRSFGTGTHVKLPGPAPDKPNVYDFKTTYDQMYNDLLR
MP..PLRVAVVCSSNQNRSMEAHNILSKRGFSVRSFGTGTHVKLPGPAPDKPNVYDFKTTY.QMYNDLLR
RetrocopyMPTPPLRVAVVCSSNQNRSMEAHNILSKRGFSVRSFGTGTHVKLPGPAPDKPNVYDFKTTYEQMYNDLLR
ParentalKDKELYTQNGILHMLDRNKRIKPRPERFQNCKDLFDLILTCEERVYDQVVEDLNSREQETCQPVHVINVD
KDKELYTQNGILHMLDRNKRIKP.PERFQ.CKDLFDLILTCEERVYDQVVEDLNSREQETCQPVHVINVD
RetrocopyKDKELYTQNGILHMLDRNKRIKPGPERFQDCKDLFDLILTCEERVYDQVVEDLNSREQETCQPVHVINVD
ParentalIQDNHEEATLGAFLICELCQCIQHTEDMENEIDELLQEFEEKSGRAFLHTVC
IQDNHEEATLGAFLICELCQCIQHTEDMENEIDELLQEFEEKSGRAFLHTVC
RetrocopyIQDNHEEATLGAFLICELCQCIQHTEDMENEIDELLQEFEEKSGRAFLHTVC

Legend:
*Stop codon
>Forward frameshift by one nucleotide
<Reverse frameshift by one nucleotide