Parental gene:

TAF12, ENSCJAG00000009742

Aliases:None
Description:TAF12 RNA polymerase II, TATA box binding protein (TBP)-associated factor, 20kDa [Source:HGNC Symbol;Acc:11545]
Organism:Marmoset (Callithrix jacchus)
Coordinates:7:62791673..62845611(-)


>ENSCJAG00000009742
ATGAACCAGTTTGGCCCCTCAGCCCTAATCAACCTCTCCAATTTCTCATCCATAAAACCGGAACCAGCCAGCACCCCTCC
ACAAGGCTCCATGGCCAATAGTACTACAGTGGTAAAGATACCAGGCACTCCTGGGACAGGAGGTCGTCTTAGCCCTGAAA
ACAATCAGGTATTGACCAAGAAGAAATTGCAGGACTTAGTAAGAGAAGTGGATCCTAATGAGCAGTTGGATGAAGATGTG
GAGGAGATGCTGCTGCAGATTGCTGATGATTTTATCGAGAGTGTGGTGACAGCAGCCTGTCAGCTTGCACGGCATCGCAA
GTCCAGCACTCTGGAGGTGAAAGATGTCCAGCTACATTTAGAGCGCCAGTGGAACATGTGGATCCCAGGATTTGGCTCTG
AAGAAATCCGACCCTACAAAAAAGCTTGCACCACGGAAGCTCACAAACAGAGAATGGCATTAATCCGGAAAACAACCAAG
AAATAA

Library Parental gene expression (RPM)
SRP051959_spleen 11 .72 RPM
SRP051959_skeletal_muscle 8 .43 RPM
SRP051959_lymph_node 10 .16 RPM
SRP051959_lung 10 .05 RPM
SRP051959_liver 7 .32 RPM
SRP051959_kidney 6 .15 RPM
SRP051959_heart 6 .00 RPM
SRP051959_colon 5 .64 RPM



Species Parental gene accession Homology type Retrogenes number
Choloepus hoffmanni ENSCHOG00000004366 ortholog_one2one 4 retrogenes
retro_chof_1112, retro_chof_2145, retro_chof_2182, retro_chof_402,
Cavia porcellus ENSCPOG00000009044 ortholog_one2one 3 retrogenes
retro_cpor_1211, retro_cpor_352, retro_cpor_895,
Dipodomys ordii ENSDORG00000015036 ortholog_one2one 1 retrogene
retro_dord_384,
Echinops telfairi ENSETEG00000012597 ortholog_one2one 2 retrogenes
retro_etel_129, retro_etel_540,
Macropus eugenii ENSMEUG00000000914 ortholog_one2one 3 retrogenes
retro_meug_1305, retro_meug_1609, retro_meug_1730,
Myotis lucifugus ENSMLUG00000012595 ortholog_one2one 8 retrogenes
retro_mluc_1214, retro_mluc_2541, retro_mluc_2542, retro_mluc_2598, retro_mluc_403, retro_mluc_412, retro_mluc_415, retro_mluc_416,
Monodelphis domestica ENSMODG00000010943 ortholog_one2one 1 retrogene
retro_mdom_603,
Mustela putorius furo ENSMPUG00000015506 ortholog_one2one 1 retrogene
retro_mputfur_458,
Oryctolagus cuniculus ENSOCUG00000003935 ortholog_one2one 2 retrogenes
retro_ocun_510, retro_ocun_712,
Ochotona princeps ENSOPRG00000001524 ortholog_one2one 1 retrogene
retro_opri_503,
Rattus norvegicus ENSRNOG00000048288 ortholog_one2one 1 retrogene
retro_rnor_2638,
Sorex araneus ENSSARG00000007568 ortholog_one2many 5 retrogenes
retro_sara_243, retro_sara_35, retro_sara_358, retro_sara_441, retro_sara_570,
Tarsius syrichta ENSTSYG00000005320 ortholog_one2one 1 retrogene
retro_tsyr_1288,
Tursiops truncatus ENSTTRG00000005548 ortholog_one2one 1 retrogene
retro_ttru_1943,
Vicugna pacos ENSVPAG00000006779 ortholog_one2one 1 retrogene
retro_vpac_362,

# RetrogeneDB ID Identity (%) Coverage (%) ORF conservation Expression evidence RDV
1. retro_cjac_2398 85.22 71.43
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Download FASTA sequences of all ENSCJAG00000009742 retrocopies