Parental gene:

C12orf49, ENSCJAG00000009570

Aliases:None
Description:chromosome 12 open reading frame 49 [Source:HGNC Symbol;Acc:26128]
Organism:Marmoset (Callithrix jacchus)
Coordinates:9:107303493..107324509(-)


>ENSCJAG00000009570
ATGGTGAACCTGGCGGCCATGGTGTGGCGCCGGCTTCTGCGGAAGAGGTGGGTGCTCGCCCTGGTCTTCGGGCTGTCGCT
CGTCTACTTCCTCAGCAGCACCTTCAAGCACGAGGAGAGGGCAGTGAGAGATAGGAATCTCCTCCAGGTTCAAGACCATG
ATCAGCCCATCCTGTGGAAAGTGCAATTTAACTTGGGCAACAGCAGTCGTCCGAGCAATCAGTGCCGCAACTCCATTCAA
GGGAAGCACCTCATCACTGATGAACTCGGCTACGTTTGCGAGAGGAAGGATTTGCTGGTGAACGGCTGCTGTAACGTGAA
CGTCCCCAGCACAAAGCAGTACTGCTGTGATGGCTGCTGGCCCAACGGCTGCTGCAGCGCTTACGAGTACTGTGTCTCCT
GCTGCCTGCAGCCCAACAAGCAACTTCTCCTGGAGCGCTTCCTCAACCGGGCAGCTGTGGCATTCCAGAACCTCTTCATG
GCAGTCGAAGATCACTTTGAGTTGTGCCTGGCCAAATGCAGGACCTCATCCCAGAGCGTGCAGCATGAGAACACCTACCG
GGACCCCATAGCAAAGTATTGCTATGGAGAAAGCCCGCCCGAGCTCTTCCCTGCATGA

Library Parental gene expression (RPM)
SRP051959_spleen 7 .58 RPM
SRP051959_skeletal_muscle 5 .63 RPM
SRP051959_lymph_node 8 .01 RPM
SRP051959_lung 11 .86 RPM
SRP051959_liver 4 .96 RPM
SRP051959_kidney 12 .22 RPM
SRP051959_heart 6 .10 RPM
SRP051959_colon 11 .12 RPM



Species Parental gene accession Homology type Retrogenes number
Ailuropoda melanoleuca ENSAMEG00000012481 ortholog_one2one 2 retrogenes
retro_amel_1518, retro_amel_1578,
Bos taurus ENSBTAG00000047139 ortholog_one2one 1 retrogene
retro_btau_1667,
Dasypus novemcinctus ENSDNOG00000001294 ortholog_one2one 9 retrogenes
retro_dnov_126, retro_dnov_1532, retro_dnov_1609, retro_dnov_1622, retro_dnov_1739, retro_dnov_2042, retro_dnov_2185, retro_dnov_2285, retro_dnov_232,
Echinops telfairi ENSETEG00000016892 ortholog_one2one 3 retrogenes
retro_etel_1064, retro_etel_1377, retro_etel_410,
Homo sapiens ENSG00000111412 ortholog_one2one 1 retrogene
retro_hsap_4758,
Gorilla gorilla ENSGGOG00000015690 ortholog_one2one 2 retrogenes
retro_ggor_2963, retro_ggor_508,
Myotis lucifugus ENSMLUG00000011912 ortholog_one2many 1 retrogene
retro_mluc_166,
Macaca mulatta ENSMMUG00000018247 ortholog_one2one 2 retrogenes
retro_mmul_2376, retro_mmul_2537,
Pan troglodytes ENSPTRG00000005500 ortholog_one2one 1 retrogene
retro_ptro_2798,

# RetrogeneDB ID Identity (%) Coverage (%) ORF conservation Expression evidence RDV
1. retro_cjac_1471 66.98 51.22
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Download FASTA sequences of all ENSCJAG00000009570 retrocopies