Parental gene: | GTPBP4, ENSCJAG00000008494 |
| Aliases: | None |
| Description: | nucleolar GTP-binding protein 1 [Source:RefSeq peptide;Acc:NP_001240708] |
| Organism: | Marmoset (Callithrix jacchus) |
| Coordinates: | 7:151501..177960(+) |
>ENSCJAG00000008494
ATGGCGCACTACAACTTCAAGAAAATTACTGTGGTACCGTCCGCCAAGGACTTTATTGACCTGACATTGTCGAAGACTCA
ACGAAAGACTCCAACCGTTATTCATAAACATTACCAAATTCATCGCATTAGACATTTTTACATGAGAAAAGTCAAATTTA
CTCAACAGAATTACCATGATAGACTTTCACAAATTCTAACAGATTTTCCTAAGTTGGATGACATTCATCCATTCTACGCA
GACTTGATGAATATTCTGTACGACAAAGATCACTACAAGTTGGCTCTGGGGCAAATAAATATTGCCAAAAATTTAGTGGA
CAATGTTGCTAAAGATTATGTGCGGTTGATGAAGTACGGCGACTCTCTCTACCGCTGCAAGCAGTTGAAGCGTGCGGCCC
TGGGGCGGATGTGCACCGTGATCAAGAGGCAGAAGCAGAGTTTGGAGTATTTGGAGCAAGTGCGTCAGCATTTATCCGTT
GCAACATTGATTCCAATAACAGACTCTGCTTTGTGTGGGTACCCAAATGTAGGCAAGTCCAGCTCATCAATAAGTGTGAC
GAGAGCAGATGTGGATGTCCAGCCTTATGCGTTCACAACCAAGTCTCTGTTTGTTGGGCACATGGATTATAAGTATCTAC
GTTGGCAGGTTGTAGACACTCCTGGGATACTGGACCACCCTCTGGAGGATAGGAACACCATCGAGATGCAGGCCATCACT
GCCCTGGCCCACCTCCGTGCTGCGGTCCTGTACGTGATGGATTTGTCTGAGCAGTGTGGGCACGGGCTGAGGGAGCAGCT
AGAACTCTTCCAGAACATCAGACCTCTCTTCATCAACAAGCCTCTTATAGTTGTAGCCAACAAATGTGATGTGAAGAGAA
TAGCTGAACTTTCTGAAGATGATCAGAAAATATTTACAAATTTGCAGGCTGAAGGATTCCCTGTAATAGAGACCAGCACC
TTGACTGAGGAAGGTGTTATTAAAGTTAAAACAGAGGCTTGCAATAGGCTTTTGGCTCATCGAGTGGAAACCAAAATGAA
GGGAAATAAAGTGAATGAGGTGCTGAATAGACTACACCTGGCTGTCCCAACCAGGAGGGACGATAAGGAGAGGCCCCCTT
TCATCCCTGAAGGAGTGGTGGCACGCAGGAAGAGAATGGAAATGGAGGAGCCCAAGAAAAAGAGGGAACGAGATCTTGAG
CTGGAAATGGGAGATGATTATATTTTGGATCTTCAGAAGTACTGGGATTTAATGAATTCGTCTGAAAAACATGATAAGAT
ACCAGAAATCTGGGAAGGCCATAATATAGCTGATTATATTGATCCAGCCATCATGAAGAAATTGGAAGAATTAGAAAAAG
AAGAAGAGCTGAGAACAGCTGCTGGAGAGTATGACAGTGACTCTGAGAGTGAAGATGAGGAGATGCTGGAGATTCGACAG
CTGGCAAAGCAGATTAGAGAGAAGAAGAAGTTGAAAATTCTGGAGTCCAAAGAAAAGAATACACAGGGACCCAGGATGCC
TCGAACTGCTAAGAAGGTTCAGAGGACAGTTTTGGAGAATGAGATGCGTAGTCTTGGTGTTGACATGGACGATAAAGACA
ACGCCCACTACGCAGTCCAGGCAAGAAGATCCCGGAGTGTCACTAGGAAAAGAAAGCGGGAAGACTCTGCTCCCCCCTCC
TCTGTGGCCCGGAGTCGGAGTCGGAGTTGCTCTCGAACTCCACGTGACGTTTCTGGTCTTCGGGATGTCAAGATGGTGAA
GAAAGCCAAGACTATGATGAAGAATGCTCAGAAGAAGATGAATCGGTTGGGGAAGAAAGGGGAGGCAGATAGACATGTGT
TTGATATGAAGCCCAAGCACTTACTCTCTGGAAAGAGGAAAGCTGGCAAAAAGGACAGGAGATAG
ATGGCGCACTACAACTTCAAGAAAATTACTGTGGTACCGTCCGCCAAGGACTTTATTGACCTGACATTGTCGAAGACTCA
ACGAAAGACTCCAACCGTTATTCATAAACATTACCAAATTCATCGCATTAGACATTTTTACATGAGAAAAGTCAAATTTA
CTCAACAGAATTACCATGATAGACTTTCACAAATTCTAACAGATTTTCCTAAGTTGGATGACATTCATCCATTCTACGCA
GACTTGATGAATATTCTGTACGACAAAGATCACTACAAGTTGGCTCTGGGGCAAATAAATATTGCCAAAAATTTAGTGGA
CAATGTTGCTAAAGATTATGTGCGGTTGATGAAGTACGGCGACTCTCTCTACCGCTGCAAGCAGTTGAAGCGTGCGGCCC
TGGGGCGGATGTGCACCGTGATCAAGAGGCAGAAGCAGAGTTTGGAGTATTTGGAGCAAGTGCGTCAGCATTTATCCGTT
GCAACATTGATTCCAATAACAGACTCTGCTTTGTGTGGGTACCCAAATGTAGGCAAGTCCAGCTCATCAATAAGTGTGAC
GAGAGCAGATGTGGATGTCCAGCCTTATGCGTTCACAACCAAGTCTCTGTTTGTTGGGCACATGGATTATAAGTATCTAC
GTTGGCAGGTTGTAGACACTCCTGGGATACTGGACCACCCTCTGGAGGATAGGAACACCATCGAGATGCAGGCCATCACT
GCCCTGGCCCACCTCCGTGCTGCGGTCCTGTACGTGATGGATTTGTCTGAGCAGTGTGGGCACGGGCTGAGGGAGCAGCT
AGAACTCTTCCAGAACATCAGACCTCTCTTCATCAACAAGCCTCTTATAGTTGTAGCCAACAAATGTGATGTGAAGAGAA
TAGCTGAACTTTCTGAAGATGATCAGAAAATATTTACAAATTTGCAGGCTGAAGGATTCCCTGTAATAGAGACCAGCACC
TTGACTGAGGAAGGTGTTATTAAAGTTAAAACAGAGGCTTGCAATAGGCTTTTGGCTCATCGAGTGGAAACCAAAATGAA
GGGAAATAAAGTGAATGAGGTGCTGAATAGACTACACCTGGCTGTCCCAACCAGGAGGGACGATAAGGAGAGGCCCCCTT
TCATCCCTGAAGGAGTGGTGGCACGCAGGAAGAGAATGGAAATGGAGGAGCCCAAGAAAAAGAGGGAACGAGATCTTGAG
CTGGAAATGGGAGATGATTATATTTTGGATCTTCAGAAGTACTGGGATTTAATGAATTCGTCTGAAAAACATGATAAGAT
ACCAGAAATCTGGGAAGGCCATAATATAGCTGATTATATTGATCCAGCCATCATGAAGAAATTGGAAGAATTAGAAAAAG
AAGAAGAGCTGAGAACAGCTGCTGGAGAGTATGACAGTGACTCTGAGAGTGAAGATGAGGAGATGCTGGAGATTCGACAG
CTGGCAAAGCAGATTAGAGAGAAGAAGAAGTTGAAAATTCTGGAGTCCAAAGAAAAGAATACACAGGGACCCAGGATGCC
TCGAACTGCTAAGAAGGTTCAGAGGACAGTTTTGGAGAATGAGATGCGTAGTCTTGGTGTTGACATGGACGATAAAGACA
ACGCCCACTACGCAGTCCAGGCAAGAAGATCCCGGAGTGTCACTAGGAAAAGAAAGCGGGAAGACTCTGCTCCCCCCTCC
TCTGTGGCCCGGAGTCGGAGTCGGAGTTGCTCTCGAACTCCACGTGACGTTTCTGGTCTTCGGGATGTCAAGATGGTGAA
GAAAGCCAAGACTATGATGAAGAATGCTCAGAAGAAGATGAATCGGTTGGGGAAGAAAGGGGAGGCAGATAGACATGTGT
TTGATATGAAGCCCAAGCACTTACTCTCTGGAAAGAGGAAAGCTGGCAAAAAGGACAGGAGATAG
| Library | Parental gene expression (RPM) |
|---|---|
| SRP051959_spleen | 20 .92 RPM |
| SRP051959_skeletal_muscle | 19 .06 RPM |
| SRP051959_lymph_node | 25 .30 RPM |
| SRP051959_lung | 19 .59 RPM |
| SRP051959_liver | 17 .48 RPM |
| SRP051959_kidney | 21 .08 RPM |
| SRP051959_heart | 17 .47 RPM |
| SRP051959_colon | 14 .29 RPM |
| Species | Parental gene accession | Homology type | Retrogenes number | |
|---|---|---|---|---|
| Cavia porcellus | ENSCPOG00000013736 | ortholog_many2many | 1 retrogene | |
| Rattus norvegicus | ENSRNOG00000016217 | ortholog_many2many | 2 retrogenes | |
| Sarcophilus harrisii | ENSSHAG00000014713 | ortholog_one2many | 1 retrogene | |
| Ictidomys tridecemlineatus | ENSSTOG00000010042 | ortholog_one2many | 1 retrogene |
| # | RetrogeneDB ID | Identity (%) | Coverage (%) | ORF conservation | Expression evidence | RDV |
|---|---|---|---|---|---|---|
| 1. | retro_cjac_992 | 96.71 | 100.00 | Please wait, loading  | Please wait, loading | Please wait, loading |
| 2. | retro_cjac_2592 | 83.83 | 100.00 | Please wait, loading | Please wait, loading | Please wait, loading |
Download FASTA sequences of all ENSCJAG00000008494 retrocopies