Parental gene:

YWHAQ, ENSCJAG00000006394

Aliases:None
Description:tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein, theta polypeptide [Source:HGNC Symbol;Acc:12854]
Organism:Marmoset (Callithrix jacchus)
Coordinates:14:99030430..99080880(+)


>ENSCJAG00000006394
ATGGAGAAGACGGAGCTGATCCAGAAGGCCAAGCTGGCCGAGCAGGCCGAGCGCTACGACGACATGGCCACCTGCATGAA
GGCAGTGACCGAGCAGGGCGCCGAGCTGTCCAACGAGGAGCGCAACCTGCTCTCCGTGGCCTACAAGAACGTGGTCGGGG
GCCGCAGGTCCGCCTGGAGGGTCATCTCGAGCATCGAGCAGAAGACCGACACCTCCGACAAGAAGTTGCAGCTGATTAAG
GACTATCGGGAGAAAGTGGAGTCCGAGCTCAGATCCATCTGCACCACGGTCCTGGAGTTGCTGGATAAATACTTAATAGC
CAATGCAACTAATCCAGAGAGTAAGGTCTTCTATCTGAAAATGAAGGGTGATTACTTCCGGTACCTTGCTGAAGTTGCAT
GTGGTGATGATCGAAAACAAACGATAGATAATTCCCAAGGGGCTTACCAAGAGGCATTTGATATAAGCAAGAAGGAAATG
CAACCCACACACCCAATACGCCTGGGGCTTGCTCTTAACTTTTCTGTATTTTACTATGAGATTCTTAATAACCCAGAGCT
TGCCTGCACGCTGGCTAAAACGGCTTTCGATGAGGCCATTGCTGAACTTGATACACTGAATGAAGACTCATACAAAGACA
GCACTCTAATCATGCAGTTGCTTAGAGACAACCTAACACTTTGGACATCAGACAGTGCAGGAGAAGAATGTGATGCAGCA
GAAGGGGCTGAGAACTAA

Library Parental gene expression (RPM)
SRP051959_spleen 37 .31 RPM
SRP051959_skeletal_muscle 15 .50 RPM
SRP051959_lymph_node 30 .66 RPM
SRP051959_lung 37 .14 RPM
SRP051959_liver 33 .66 RPM
SRP051959_kidney 48 .65 RPM
SRP051959_heart 49 .66 RPM
SRP051959_colon 68 .23 RPM



Species Parental gene accession Homology type Retrogenes number
Bos taurus ENSBTAG00000002108 ortholog_one2one 2 retrogenes
retro_btau_1180, retro_btau_86,
Choloepus hoffmanni ENSCHOG00000004661 possible_ortholog 13 retrogenes
retro_chof_136, retro_chof_1427, retro_chof_1605, retro_chof_1835, retro_chof_2026, retro_chof_2115, retro_chof_2134, retro_chof_2233, retro_chof_429, retro_chof_481, retro_chof_489, retro_chof_527, retro_chof_863,
Callithrix jacchus ENSCJAG00000015844 within_species_paralog 5 retrogenes
retro_cjac_1769, retro_cjac_2164, retro_cjac_3000, retro_cjac_31, retro_cjac_881,
Callithrix jacchus ENSCJAG00000017664 within_species_paralog 2 retrogenes
retro_cjac_1002, retro_cjac_2214,
Echinops telfairi ENSETEG00000015359 ortholog_one2one 4 retrogenes
retro_etel_1027, retro_etel_1048, retro_etel_235, retro_etel_65,
Homo sapiens ENSG00000134308 ortholog_one2one 2 retrogenes
retro_hsap_3004, retro_hsap_8,
Gorilla gorilla ENSGGOG00000001569 ortholog_one2one 1 retrogene
retro_ggor_2081,
Macropus eugenii ENSMEUG00000014442 possible_ortholog 7 retrogenes
retro_meug_1122, retro_meug_1208, retro_meug_1259, retro_meug_1549, retro_meug_1918, retro_meug_2106, retro_meug_538,
Myotis lucifugus ENSMLUG00000005383 ortholog_one2one 1 retrogene
retro_mluc_1817,
Monodelphis domestica ENSMODG00000014740 ortholog_one2many 1 retrogene
retro_mdom_1339,
Mustela putorius furo ENSMPUG00000013252 ortholog_one2one 2 retrogenes
retro_mputfur_1132, retro_mputfur_730,
Nomascus leucogenys ENSNLEG00000013534 ortholog_one2many 3 retrogenes
retro_nleu_2543, retro_nleu_750, retro_nleu_869,
Oryctolagus cuniculus ENSOCUG00000010482 ortholog_one2one 1 retrogene
retro_ocun_1463,
Pongo abelii ENSPPYG00000012663 ortholog_one2one 4 retrogenes
retro_pabe_1165, retro_pabe_2490, retro_pabe_3391, retro_pabe_3511,
Pelodiscus sinensis ENSPSIG00000012692 possible_ortholog 1 retrogene
retro_psin_2,
Pan troglodytes ENSPTRG00000011641 ortholog_one2one 2 retrogenes
retro_ptro_2032, retro_ptro_3,
Pteropus vampyrus ENSPVAG00000005334 ortholog_one2one 1 retrogene
retro_pvam_983,
Rattus norvegicus ENSRNOG00000008104 possible_ortholog 5 retrogenes
retro_rnor_1569, retro_rnor_2065, retro_rnor_2123, retro_rnor_2180, retro_rnor_2746,
Sorex araneus ENSSARG00000012476 ortholog_one2one 4 retrogenes
retro_sara_1, retro_sara_162, retro_sara_179, retro_sara_23,

# RetrogeneDB ID Identity (%) Coverage (%) ORF conservation Expression evidence RDV
1. retro_cjac_2197 94.72 100.00
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2. retro_cjac_3127 82.89 92.65
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Download FASTA sequences of all ENSCJAG00000006394 retrocopies