RetrogeneDB ID:

retro_sara_179

Retrocopy
location
Organism:Shrew (Sorex araneus)
Coordinates:GeneScaffold_6052:99414..100017(-)
Located in intron of:ENSSARG00000012982
Retrocopy
information
Ensembl ID:ENSSARG00000013029
Aliases:None
Status:KNOWN_PSEUDOGENE
Parental gene
information
Parental gene summary:
Parental gene symbol:YWHAQ
Ensembl ID:ENSSARG00000012476
Aliases:None
Description:tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein, theta polypeptide [Source:HGNC Symbol;Acc:12854]


Retrocopy-Parental alignment summary:






>retro_sara_179
GCAACCTGCTACAAGAATGTGGTGGGTGGCCGCCGCTCGGCCTGGAGGGTCATCTCAAGCATCGAGCAGAAGACGGACAG
CTCGGACAGGAAGCTGCAGCTCACCAAGGACTACCGTGAGAAAGTGGAGTCGGAGCTGCGCTCCATCTGCACCACGGCCC
TGGAATTGTTGGATAAGTATTTAATAGCCAATGCAGCTAATCCAGAGAGGAAGGTGTTCTACCTGAAATTGGAGGGGGAT
TATTTCCGGTATCTTGCTGAAGTTGCAAGTGGTGATGATCGAAAACAAACGATAGATGATTCCCAAGGAGCTTATCAGGA
AGCTTTTGATATAAGCAAGAAAGAGATGCAACCTACACATCCTATTCGAATGGGGCTTGCTCTTAACTTTTCTGTATTTT
ATTGTGAGATTCTTAATAACCCAGAGCTGGCCTGCACACTGGCTAAAAGGACTTTTGATGAGGCCATTGCAGAACTTGAT
ATACTGAATGAAGACTCATACAAAGACAGCACCCTCATCATGCAGTTCCTTAGAGATAACCTAACATTATGGACATCAGA
CAGTGCAGGAGAAGAATGCGATGCAGCAGAAGGGGCAGAGAAC

ORF - retro_sara_179 Open Reading Frame is conserved.
Retrocopy - Parental Gene Alignment summary:
Percent Identity: 91.54 %
Parental protein coverage: 82.04 %
Number of stop codons detected: 0
Number of frameshifts detected 0


Retrocopy - Parental Gene Alignment:

ParentalSVAYKNVVGGRRSAWRVISSIEQKTDSSDKKLQLIKDYREKVESELRSICTTVLELLDKYLIANATNPES
...YKNVVGGRRSAWRVISSIEQKTDSSD.KLQL.KDYREKVESELRSICTT.LELLDKYLIANA.NPE.
RetrocopyATCYKNVVGGRRSAWRVISSIEQKTDSSDRKLQLTKDYREKVESELRSICTTALELLDKYLIANAANPER
ParentalKVFYLKMKGDYFRYLAEVASGDDRKQTIDNSQGAYQEAFDISKKEMQPTHPIRLGLALNFSVFYYEILNN
KVFYLK..GDYFRYLAEVASGDDRKQTID.SQGAYQEAFDISKKEMQPTHPIR.GLALNFSVFY.EILNN
RetrocopyKVFYLKLEGDYFRYLAEVASGDDRKQTIDDSQGAYQEAFDISKKEMQPTHPIRMGLALNFSVFYCEILNN
ParentalPELACTLAKTAFDEAIAELDTLNEDSYKDSTLIMQLLRDNLTLWTSDSAGEECDAAEGAEN
PELACTLAK..FDEAIAELD.LNEDSYKDSTLIMQ.LRDNLTLWTSDSAGEECDAAEGAEN
RetrocopyPELACTLAKRTFDEAIAELDILNEDSYKDSTLIMQFLRDNLTLWTSDSAGEECDAAEGAEN

Legend:
*Stop codon
>Forward frameshift by one nucleotide
<Reverse frameshift by one nucleotide