Parental gene:

DCUN1D1, ENSCJAG00000005148

Aliases:None
Description:DCN1, defective in cullin neddylation 1, domain containing 1 [Source:HGNC Symbol;Acc:18184]
Organism:Marmoset (Callithrix jacchus)
Coordinates:15:4604687..4638636(-)


>ENSCJAG00000005148
AACAAGTTGAAATCATCGCAGAAGGATAAAGTTCGTCAGTTTATGATCTTCACACAGTCTAGTGAAAAAACAGCAGTAAG
TTGTCTCTCTCAAAATGACTGGAAGTTAGATGTCGCAACAGATAATTTTTTCCAAAACCCTGAACTTTATATACGAGAGA
GTGTAAAAGGATCATTGGACAGGAAGAAGTTAGAACAACTGTACAATAGATACAAAGATCCTCAAGATGAGAATAAAATT
GGAATAGATGGTATACAGCAGTTCTGTGATGACCTGGCACTCGATCCAGCCAGCATTAGTGTGTTGATTATTGCATGGAA
GTTCAGAGCAGCCACACAGTGTGAGTTCTCCAAACAGGAGTTCATGGACGGCATGACAGAATTAGGATGTGACAGCATAG
AAAAACTAAAGGCCCAGATACCCAAGATGGAACAAGAACTGAAAGAACCAGCACGATTTAAGGATTTTTACCAGTTTACT
TTTAATTTTGCAAAGAATCCAGGACAAAAAGGATTAGATCTAGAAATGGCCATTGCCTACTGGAACTTAGTGCTTAATGG
AAGATTTAAATTCTTAGACTTATGGAATAAATTTTTGTTGGAGCATCATAAACGATCAATACCAAAAGACACTTGGAACC
TTCTTTTAGACTTCAGTACAATGATTGCAGATGACATGTCGAATTACGATGAAGAAGGAGCATGGCCTGTTCTTATTGAT
GACTTTGTGGAATTTGCACGCCCTCAAATTGCTGGGACAAAAAGTACAACAGTGTAG

Library Parental gene expression (RPM)
SRP051959_spleen 30 .36 RPM
SRP051959_skeletal_muscle 30 .38 RPM
SRP051959_lymph_node 24 .06 RPM
SRP051959_lung 28 .06 RPM
SRP051959_liver 27 .16 RPM
SRP051959_kidney 32 .37 RPM
SRP051959_heart 27 .40 RPM
SRP051959_colon 31 .95 RPM



Species Parental gene accession Homology type Retrogenes number
Choloepus hoffmanni ENSCHOG00000013358 ortholog_one2one 14 retrogenes
retro_chof_1054, retro_chof_1129, retro_chof_1198, retro_chof_1373, retro_chof_1546, retro_chof_1728, retro_chof_2049, retro_chof_232, retro_chof_2329, retro_chof_2369, retro_chof_2373, retro_chof_479, retro_chof_767, retro_chof_812,
Callithrix jacchus ENSCJAG00000018601 within_species_paralog 1 retrogene
retro_cjac_3959,
Cavia porcellus ENSCPOG00000022086 ortholog_one2many 4 retrogenes
retro_cpor_1289, retro_cpor_756, retro_cpor_758, retro_cpor_870,
Dasypus novemcinctus ENSDNOG00000019073 ortholog_one2one 2 retrogenes
retro_dnov_1494, retro_dnov_840,
Echinops telfairi ENSETEG00000000166 ortholog_one2one 1 retrogene
retro_etel_1460,
Homo sapiens ENSG00000043093 ortholog_one2one 1 retrogene
retro_hsap_3502,
Gorilla gorilla ENSGGOG00000010767 ortholog_one2one 1 retrogene
retro_ggor_2368,
Macaca mulatta ENSMMUG00000010552 ortholog_one2one 1 retrogene
retro_mmul_1782,
Mustela putorius furo ENSMPUG00000002369 ortholog_one2one 1 retrogene
retro_mputfur_919,
Mus musculus ENSMUSG00000027708 ortholog_one2one 1 retrogene
retro_mmus_1009,
Nomascus leucogenys ENSNLEG00000005983 ortholog_one2one 1 retrogene
retro_nleu_793,
Otolemur garnettii ENSOGAG00000000658 ortholog_one2one 1 retrogene
retro_ogar_3499,
Pan troglodytes ENSPTRG00000015661 ortholog_one2one 1 retrogene
retro_ptro_2374,
Tarsius syrichta ENSTSYG00000012276 ortholog_one2one 1 retrogene
retro_tsyr_669,

# RetrogeneDB ID Identity (%) Coverage (%) ORF conservation Expression evidence RDV
1. retro_cjac_1423 79.17 83.33
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2. retro_cjac_2358 81.61 100.00
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Download FASTA sequences of all ENSCJAG00000005148 retrocopies