Parental gene:

TUBG1, ENSCJAG00000004907

Aliases:None
Description:None
Organism:Marmoset (Callithrix jacchus)
Coordinates:5:75059660..75118883(+)


>ENSCJAG00000004907
ATGCCGAGGGAAATCATCACCCTACAGTTGGGCCAGTGCGGCAATCAGATTGGGTTCGAGTTCTGGAAACAGCTGTGCGC
CGAGCATGGTATCAGCCCTGAGGGCATCGTGGAGGAGTTCGCCACCGAGGGCACTGACCGCAAGGACGTCTTTTTCTACC
AGGCAGATGATGAGCACTACATCCCCCGGGCCGTGCTGCTGGACCTGGAGCCCCGGGTGATCCACTCCATCCTCAACTCC
CCCTACGCCAAGCTCTACAACCCAGAGAACATCTACCTGTCGGAGCATGGAGGAGGAGCTGGCAACAACTGGGCCAGTGG
ATTCTCCCAGGGAGAGAAGATCCACGAGGACATTTTTGACATCATAGACCGGGAAGCGGATGGTAGTGACAGTCTAGAGG
GCTTTGTGTTGTGTCACTCCATTGCTGGGGGGACAGGCTCTGGCCTGGGCTCCTACCTCTTAGAACGGCTGAATGACAGG
TATCCTAAGAAGCTGGTGCAGACATACTCAGTGTTTCCCAACCAGGACGAGATGAGCGACGTGGTGGTCCAGCCTTATAA
TTCACTCCTCACACTCAAGAGGCTAACGCAGAACGCAGACTGTGTGGTGGTGCTGGACAACACAGCCCTGAACCGGATTG
CCACAGACCGCCTGCACATCCAGAACCCGTCCTTCTCCCAGATCAACCAGCTGGTGTCCACCATCATGTCAGCCAGCACC
ACCACCCTGCGCTACCCCGGCTACATGAACAATGACCTCATCGGCCTCATCGCCTCACTTATCCCCACTCCGCGGCTCCA
CTTCCTCATGACCGGCTATACCCCGCTCACTACGGACCAGTCAGTGGCCAGCGTGAGGAAGACCACGGTCCTGGATGTCA
TGAGGCGGCTCCTGCAGCCCAAGAATGTGATGGTGTCCACAGGCCGAGACCGCCAGACCAACCACTGCTACATCGCCATC
CTCAACATCATCCAGGGAGAGGTGGATCCCACCCAGGTCCACAAGAGCCTGCAGAGGATCCGGGAACGGAAATTGGCCAA
CTTCATCCCATGGGGCCCTGCCAGCATCCAGGTGGCCCTGTCGAGGAAGTCTCCTTACCTGCCCTCGGCCCACCGGGTCA
GCGGGCTCATGATGGCCAACCACACCAGCATTTCCTCGCTCTTTGAGAGAACCTGTCGCCAATATGACAAGCTGCGGAAG
CGGGAGGCCTTCCTGGAGCAGTTCCGCAAGGAGGACATGTTCAAGGAAAACTTTGATGAGATGGACACATCCAGGGAGAT
TGTGCAGCAGCTCATTGATGAGTACCATGCAGCCACACGGCCAGACTACATCTCCTGGGGCACCCAGGAGCAGTGA

Library Parental gene expression (RPM)
SRP051959_spleen 4 .33 RPM
SRP051959_skeletal_muscle 10 .50 RPM
SRP051959_lymph_node 3 .63 RPM
SRP051959_lung 4 .99 RPM
SRP051959_liver 3 .14 RPM
SRP051959_kidney 6 .52 RPM
SRP051959_heart 8 .00 RPM
SRP051959_colon 3 .17 RPM



Species Parental gene accession Homology type Retrogenes number
Echinops telfairi ENSETEG00000008542 possible_ortholog 1 retrogene
retro_etel_496,
Homo sapiens ENSG00000131462 ortholog_one2one 1 retrogene
retro_hsap_3725,
Gorilla gorilla ENSGGOG00000010899 possible_ortholog 1 retrogene
retro_ggor_2515,
Macaca mulatta ENSMMUG00000016797 ortholog_one2one 1 retrogene
retro_mmul_1692,
Nomascus leucogenys ENSNLEG00000011686 ortholog_one2many 1 retrogene
retro_nleu_71,
Pongo abelii ENSPPYG00000008384 possible_ortholog 1 retrogene
retro_pabe_3132,
Pan troglodytes ENSPTRG00000009211 ortholog_one2one 1 retrogene
retro_ptro_2520,
Rattus norvegicus ENSRNOG00000020213 ortholog_one2one 2 retrogenes
retro_rnor_2070, retro_rnor_2072,
Tupaia belangeri ENSTBEG00000015835 ortholog_one2one 3 retrogenes
retro_tbel_188, retro_tbel_3516, retro_tbel_955,

# RetrogeneDB ID Identity (%) Coverage (%) ORF conservation Expression evidence RDV
1. retro_cjac_4142 81.50 100.00
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Download FASTA sequences of all ENSCJAG00000004907 retrocopies