Parental gene: | MMADHC, ENSCJAG00000003086 |
| Aliases: | None |
| Description: | methylmalonic aciduria (cobalamin deficiency) cblD type, with homocystinuria [Source:HGNC Symbol;Acc:25221] |
| Organism: | Marmoset (Callithrix jacchus) |
| Coordinates: | 6:69867989..69886862(+) |
>ENSCJAG00000003086
ATGGCCAATGTGCTTTGCAACAAAGTCAGACTGGTTTCCTATCTCCCAGGATTTTGCTCTTTAGTTAAAAGGGTTGTCAA
TCCCAGAGCCTTTTCAACTGCAGGATCATCAGGTTCAGACGAGTCTCATGTGGCCACTGCAACTCCAGATATATGCTCTC
GAACAGTGTGGCCTGATGAAACTATGGGACCATTTGGACCTCAAGATCAGAGGTTCCAGCTTCCTGGGAACATAGGTTTT
GATTGCCACCTCAATGGTACTGCTTCACAGAAGAAAAGCCTTGTTCATAAAACTTTGCCTGATGTTCTAGGAGAACCTTT
ATCAAGTGAAAGACACGAGTTTGTGATGGCACAGTACGTGAATGAATTTCAGGGTAATGATGCACCTGTTGAACAAGAAA
TTAACAGTGCAGAAACTTACTTTGAAAGTGCCAGAGTAGAGTGTGCAATACAAACATGTCCAGAATTGCTGCGAAAAGAT
TTCGAATCACTGTTTCCAGAAGTAGCTAATAGCAAACTAATGATTCTGACTGTAACACAAAAAACTAAGAACGATATGAC
TGTTTGGAGTGAAGAAGTAGAAATTGAAAGAGAAGTGCTCTTAGAAGAATTCATCAATGGTGCTAAGGAAATTTGTTTTG
CTCTTCGAGCTGAGGGCTATTGGGCTGACTTTATTGACCCATCATCTGGTTTGGCATTTTTTGGACCGTATACAAACAAC
ACTCTTTTTGAAACTGACGAACGCTACCGACATTTAGGATTCTCTGTTGATGACCTTGGATGCTGTAAAGTGATTCGTCA
CAGTCTTTGGGGTACCCATGTATTTGTGGGAAGTATCTTCACTAATGCAACACCAGAGAGCCATATTATGAAGAAATTAA
GTGGAAATTAG
ATGGCCAATGTGCTTTGCAACAAAGTCAGACTGGTTTCCTATCTCCCAGGATTTTGCTCTTTAGTTAAAAGGGTTGTCAA
TCCCAGAGCCTTTTCAACTGCAGGATCATCAGGTTCAGACGAGTCTCATGTGGCCACTGCAACTCCAGATATATGCTCTC
GAACAGTGTGGCCTGATGAAACTATGGGACCATTTGGACCTCAAGATCAGAGGTTCCAGCTTCCTGGGAACATAGGTTTT
GATTGCCACCTCAATGGTACTGCTTCACAGAAGAAAAGCCTTGTTCATAAAACTTTGCCTGATGTTCTAGGAGAACCTTT
ATCAAGTGAAAGACACGAGTTTGTGATGGCACAGTACGTGAATGAATTTCAGGGTAATGATGCACCTGTTGAACAAGAAA
TTAACAGTGCAGAAACTTACTTTGAAAGTGCCAGAGTAGAGTGTGCAATACAAACATGTCCAGAATTGCTGCGAAAAGAT
TTCGAATCACTGTTTCCAGAAGTAGCTAATAGCAAACTAATGATTCTGACTGTAACACAAAAAACTAAGAACGATATGAC
TGTTTGGAGTGAAGAAGTAGAAATTGAAAGAGAAGTGCTCTTAGAAGAATTCATCAATGGTGCTAAGGAAATTTGTTTTG
CTCTTCGAGCTGAGGGCTATTGGGCTGACTTTATTGACCCATCATCTGGTTTGGCATTTTTTGGACCGTATACAAACAAC
ACTCTTTTTGAAACTGACGAACGCTACCGACATTTAGGATTCTCTGTTGATGACCTTGGATGCTGTAAAGTGATTCGTCA
CAGTCTTTGGGGTACCCATGTATTTGTGGGAAGTATCTTCACTAATGCAACACCAGAGAGCCATATTATGAAGAAATTAA
GTGGAAATTAG
| Library | Parental gene expression (RPM) |
|---|---|
| SRP051959_spleen | 16 .76 RPM |
| SRP051959_skeletal_muscle | 55 .29 RPM |
| SRP051959_lymph_node | 11 .57 RPM |
| SRP051959_lung | 14 .45 RPM |
| SRP051959_liver | 42 .52 RPM |
| SRP051959_kidney | 30 .48 RPM |
| SRP051959_heart | 23 .89 RPM |
| SRP051959_colon | 25 .98 RPM |
| Species | Parental gene accession | Homology type | Retrogenes number | |
|---|---|---|---|---|
| Cavia porcellus | ENSCPOG00000007690 | ortholog_one2many | 1 retrogene | |
| Homo sapiens | ENSG00000168288 | ortholog_one2one | 2 retrogenes | |
| Gorilla gorilla | ENSGGOG00000027348 | ortholog_one2one | 1 retrogene | |
| Macaca mulatta | ENSMMUG00000005633 | ortholog_one2one | 1 retrogene | |
| Monodelphis domestica | ENSMODG00000003566 | ortholog_one2one | 2 retrogenes | |
| Mustela putorius furo | ENSMPUG00000000323 | ortholog_one2one | 1 retrogene | |
| Nomascus leucogenys | ENSNLEG00000010795 | ortholog_one2one | 2 retrogenes | |
| Otolemur garnettii | ENSOGAG00000034385 | ortholog_one2one | 4 retrogenes | |
| Pan troglodytes | ENSPTRG00000012525 | ortholog_one2one | 1 retrogene | |
| Ictidomys tridecemlineatus | ENSSTOG00000021576 | ortholog_one2one | 1 retrogene | |
| Tarsius syrichta | ENSTSYG00000009075 | ortholog_one2one | 1 retrogene |
| # | RetrogeneDB ID | Identity (%) | Coverage (%) | ORF conservation | Expression evidence | RDV |
|---|---|---|---|---|---|---|
| 1. | retro_cjac_4082 | 65.81 | 51.35 | Please wait, loading  | Please wait, loading | Please wait, loading |
| 2. | retro_cjac_4101 | 96.96 | 100.00 | Please wait, loading | Please wait, loading | Please wait, loading |
Download FASTA sequences of all ENSCJAG00000003086 retrocopies