Parental gene: | SRM, ENSCJAG00000002354 |
| Aliases: | None |
| Description: | spermidine synthase [Source:HGNC Symbol;Acc:11296] |
| Organism: | Marmoset (Callithrix jacchus) |
| Coordinates: | 7:45658171..45662300(-) |
>ENSCJAG00000002354
NNGGAGTCCGGCCCCGACGGCCCAGCCGCCTCCGGCCCCGCCGCTATCCGCGAGGGCTGGTTCCGCGAGACTCAGCTGTG
GCCCGGCCAGGCCCTGTCGCTGCAGGTGGAGCAGCTGCTCCACCACCGGCGCTCGCGCTACCAGGACATCCTCGTTTTCC
GCAGTAAGACCTATGGCAACGTGCTGGTATTGGACGGTGTCATCCAGTGCACAGAGAGGGATGAGTTCTCCTACCAGGAG
ATGATCGCCAACCTGCCTCTCTGCAGCCACCCCAACCCGCAAAAGGTGCTGATCATCGGGGGTGGAGACGGAGGTGTCCT
GCGCGAGGTGGTGAAGCACCCCTCGGTGGAGTCCGTGGTTCAGTGTGAGATCGACGAGGATGTCATCCAAGTCTCCAAGA
AGTTCCTGCCGGGAATGGCTGTTGGCTATTCTAGCTCGAAGCTGACCCTACATGTGGGTGATGGTTTTGAGTTCATGAAA
CAGAATCAGGATGCCTTTGATGTGATCATCACTGACTCCTCAGACCCCATGGGCCCCGCCGAAAGTCTCTTCAAAGAGTC
CTATTACCAGCTCATGAAGACGGCCCTCAAGGAAGATGGCGTCCTCTGCTGCCAGGGTGAGTGCCAGTGGCTGCACCTGG
ACCTTATCAAGGAGATGCGGCAGTTCTGCCAGTCCCTGTTCCCTGTGGTGGCCTACGCCTACTGTACCATCCCCACCTAC
CCCAGTGGCCAGATCGGCTTCATGCTGTGCAGCAAGAACCCGAGCACCAACTTCCAGGAGCCAGTGCAGCCGCTGACGCA
GCACCAGGTGGCGCAGATGCAGCTGAAGTACTACAACTCCGACGTGCACCGCGCCGCCTTCGTGCTGCCAGAGTTTGCCC
GAAAGGCCCTGAATGATGTGAGCTGA
NNGGAGTCCGGCCCCGACGGCCCAGCCGCCTCCGGCCCCGCCGCTATCCGCGAGGGCTGGTTCCGCGAGACTCAGCTGTG
GCCCGGCCAGGCCCTGTCGCTGCAGGTGGAGCAGCTGCTCCACCACCGGCGCTCGCGCTACCAGGACATCCTCGTTTTCC
GCAGTAAGACCTATGGCAACGTGCTGGTATTGGACGGTGTCATCCAGTGCACAGAGAGGGATGAGTTCTCCTACCAGGAG
ATGATCGCCAACCTGCCTCTCTGCAGCCACCCCAACCCGCAAAAGGTGCTGATCATCGGGGGTGGAGACGGAGGTGTCCT
GCGCGAGGTGGTGAAGCACCCCTCGGTGGAGTCCGTGGTTCAGTGTGAGATCGACGAGGATGTCATCCAAGTCTCCAAGA
AGTTCCTGCCGGGAATGGCTGTTGGCTATTCTAGCTCGAAGCTGACCCTACATGTGGGTGATGGTTTTGAGTTCATGAAA
CAGAATCAGGATGCCTTTGATGTGATCATCACTGACTCCTCAGACCCCATGGGCCCCGCCGAAAGTCTCTTCAAAGAGTC
CTATTACCAGCTCATGAAGACGGCCCTCAAGGAAGATGGCGTCCTCTGCTGCCAGGGTGAGTGCCAGTGGCTGCACCTGG
ACCTTATCAAGGAGATGCGGCAGTTCTGCCAGTCCCTGTTCCCTGTGGTGGCCTACGCCTACTGTACCATCCCCACCTAC
CCCAGTGGCCAGATCGGCTTCATGCTGTGCAGCAAGAACCCGAGCACCAACTTCCAGGAGCCAGTGCAGCCGCTGACGCA
GCACCAGGTGGCGCAGATGCAGCTGAAGTACTACAACTCCGACGTGCACCGCGCCGCCTTCGTGCTGCCAGAGTTTGCCC
GAAAGGCCCTGAATGATGTGAGCTGA
| Library | Parental gene expression (RPM) |
|---|---|
| SRP051959_spleen | 4 .47 RPM |
| SRP051959_skeletal_muscle | 15 .22 RPM |
| SRP051959_lymph_node | 4 .68 RPM |
| SRP051959_lung | 3 .35 RPM |
| SRP051959_liver | 6 .28 RPM |
| SRP051959_kidney | 3 .59 RPM |
| SRP051959_heart | 3 .82 RPM |
| SRP051959_colon | 4 .06 RPM |
| Species | Parental gene accession | Homology type | Retrogenes number | |
|---|---|---|---|---|
| Dasypus novemcinctus | ENSDNOG00000013348 | possible_ortholog | 1 retrogene | |
| Homo sapiens | ENSG00000116649 | ortholog_one2one | 2 retrogenes | |
| Gorilla gorilla | ENSGGOG00000014385 | ortholog_one2many | 1 retrogene | |
| Loxodonta africana | ENSLAFG00000028297 | possible_ortholog | 2 retrogenes | |
| Macropus eugenii | ENSMEUG00000007002 | ortholog_many2many | 2 retrogenes | |
| Macaca mulatta | ENSMMUG00000019321 | ortholog_one2one | 2 retrogenes | |
| Mus musculus | ENSMUSG00000006442 | possible_ortholog | 1 retrogene | |
| Nomascus leucogenys | ENSNLEG00000009532 | ortholog_one2one | 3 retrogenes | |
| Ochotona princeps | ENSOPRG00000012079 | possible_ortholog | 1 retrogene | |
| Pongo abelii | ENSPPYG00000001892 | ortholog_one2one | 3 retrogenes | |
| Pan troglodytes | ENSPTRG00000000138 | ortholog_one2one | 3 retrogenes |
| # | RetrogeneDB ID | Identity (%) | Coverage (%) | ORF conservation | Expression evidence | RDV |
|---|---|---|---|---|---|---|
| 1. | retro_cjac_2131 | 92.26 | 98.01 | Please wait, loading  | Please wait, loading | Please wait, loading |
| 2. | retro_cjac_2524 | 55.19 | 50.17 | Please wait, loading | Please wait, loading | Please wait, loading |
| 3. | retro_cjac_3331 | 95.00 | 66.45 | Please wait, loading | Please wait, loading | Please wait, loading |
| 4. | retro_cjac_4025 | 54.55 | 50.17 | Please wait, loading | Please wait, loading | Please wait, loading |
Download FASTA sequences of all ENSCJAG00000002354 retrocopies