Parental gene: | SRM, ENSDNOG00000013348 |
| Aliases: | None |
| Description: | spermidine synthase [Source:HGNC Symbol;Acc:11296] |
| Organism: | Armadillo (Dasypus novemcinctus) |
| Coordinates: | scaffold_78827:4341..6567(+) |
>ENSDNOG00000013348
ATGGAGCCCGGCCCCGCCGCCCCCGCCGGCCCCGCCGCCATCCGCGAGGGCTGGTTCCGCGAGACGTGCAGCCTGTGGCC
CGGCCAGGCCCTGTCGCTGCAGGTGGAGCAGCTGCTGCACCACCAGCACTCGCGCTTCCAGGATATCCTCGTCTTCCGCA
GTAAGACCTACGGGAACGTACTGGTGCTGGACGGGGTCATCCAGTGCACGGAGCGGGACGAGTTCTCCTACCAGGAGATG
ATCGCCAACCTGCCTCTCTGCAGCCACCCCGACCCCCGCAAGGTGTTGATCATCGGGGGTGGGGACGGGGGCGTCCTGCG
GGAGGTGGTGAAGCACCCGTCCGTGGAGTCGGTGGTCCAGTGCGAGATCGACGAGGAGGTCATCGAGGTCTCCAAGAAGT
TCCTGCCCAGCATGGCCGTTGGCTACTCCAGTTCGAAGCTGACCTTGTGTGTAGGGGACGGTTTTGAGTTTATGAAGCAG
AACCAGGATGCCTTCGACGTAATCATCACTGACTCCTCAGACCCCATGGGCCCAGCCGAGAGTCTCTTCAAGGAGTCCTA
TTACCAGCTCATGAAAACAGCCCTGAAGGAGGACGGCATTCTCTGCTGCCAGGGTGAGTGCCAGTGGCTGCACCTGGACC
TCATCAAGCAGATGCGGCAGTTCTGCAGGTCTCTCTTCCTCGTGGTGGGCTACGACTACTGCAGCATCCCCACCCCCAGC
CAGATCGGCTTCATGCTGTGC
ATGGAGCCCGGCCCCGCCGCCCCCGCCGGCCCCGCCGCCATCCGCGAGGGCTGGTTCCGCGAGACGTGCAGCCTGTGGCC
CGGCCAGGCCCTGTCGCTGCAGGTGGAGCAGCTGCTGCACCACCAGCACTCGCGCTTCCAGGATATCCTCGTCTTCCGCA
GTAAGACCTACGGGAACGTACTGGTGCTGGACGGGGTCATCCAGTGCACGGAGCGGGACGAGTTCTCCTACCAGGAGATG
ATCGCCAACCTGCCTCTCTGCAGCCACCCCGACCCCCGCAAGGTGTTGATCATCGGGGGTGGGGACGGGGGCGTCCTGCG
GGAGGTGGTGAAGCACCCGTCCGTGGAGTCGGTGGTCCAGTGCGAGATCGACGAGGAGGTCATCGAGGTCTCCAAGAAGT
TCCTGCCCAGCATGGCCGTTGGCTACTCCAGTTCGAAGCTGACCTTGTGTGTAGGGGACGGTTTTGAGTTTATGAAGCAG
AACCAGGATGCCTTCGACGTAATCATCACTGACTCCTCAGACCCCATGGGCCCAGCCGAGAGTCTCTTCAAGGAGTCCTA
TTACCAGCTCATGAAAACAGCCCTGAAGGAGGACGGCATTCTCTGCTGCCAGGGTGAGTGCCAGTGGCTGCACCTGGACC
TCATCAAGCAGATGCGGCAGTTCTGCAGGTCTCTCTTCCTCGTGGTGGGCTACGACTACTGCAGCATCCCCACCCCCAGC
CAGATCGGCTTCATGCTGTGC
| Library | Parental gene expression (RPM) |
|---|---|
| SRP012922_ascending_colon | 9 .33 RPM |
| SRP012922_cerebellum | 15 .40 RPM |
| SRP012922_heart | 4 .64 RPM |
| SRP012922_kidney | 9 .86 RPM |
| SRP012922_liver | 4 .80 RPM |
| SRP012922_lung | 8 .25 RPM |
| SRP012922_quadricep_muscle | 5 .88 RPM |
| SRP012922_spleen | 10 .07 RPM |
| Species | Parental gene accession | Homology type | Retrogenes number | |
|---|---|---|---|---|
| Callithrix jacchus | ENSCJAG00000002354 | possible_ortholog | 4 retrogenes | |
| Gorilla gorilla | ENSGGOG00000014385 | possible_ortholog | 1 retrogene | |
| Macropus eugenii | ENSMEUG00000007002 | ortholog_one2many | 2 retrogenes | |
| Macaca mulatta | ENSMMUG00000019321 | possible_ortholog | 2 retrogenes | |
| Mus musculus | ENSMUSG00000006442 | ortholog_one2one | 1 retrogene |
| # | RetrogeneDB ID | Identity (%) | Coverage (%) | ORF conservation | Expression evidence | RDV |
|---|---|---|---|---|---|---|
| 1. | retro_dnov_338 | 67.43 | 68.83 | Please wait, loading  | Please wait, loading | Please wait, loading |
Download FASTA sequences of all ENSDNOG00000013348 retrocopies