Parental gene: | SRM, ENSPPYG00000001892 |
| Aliases: | None |
| Description: | spermidine synthase [Source:HGNC Symbol;Acc:11296] |
| Organism: | Orangutan (Pongo abelii) |
| Coordinates: | 1:219295083..219303451(+) |
>ENSPPYG00000001892
GATGTCATCCAAGTCTCCAAGAAGTTCCTGCCAGGCATGGCCATTGGCTACTCTAGCTCGAAGCTGACCCTACATGTGGG
TGACGGTTTTGAGTTCATGAAACAGAATCAGGATGCCTTCGATGTGATCATCACTGACTCCTCAGACCCCATGGGCCCCG
CCGAAAGTCTCTTCAAGGAGTCCTATTACCAGCTCATGAAGACAGCTCTCAAGGAAGATGGTGTCCTCTGCTGCCAGGGC
GAGTGTCAGTGGCTGCACCTGGACCTCATCAAGGAGATGCGGCAGTTCTGCCAGTCCCTGTTCCCCGTGGTGGCCTACGC
CTACTGCACCATCCCCACCTACCCCAGCGGCCAGATCGGCTTCATGCTGTGCAGCAAGAACCCGAGCACCAACTTCCAGG
AGCCAGTGCAGCCACTGACGCAGCAGCAGGTGGCGCAGATGCAGCTGAAGTACTACAACTCCGACGTGCACCGCGCCGCC
TTCGTGCTGCCCGAGTTTGCCCGCAAGGCCCTGAATGATGTGAGCTGA
GATGTCATCCAAGTCTCCAAGAAGTTCCTGCCAGGCATGGCCATTGGCTACTCTAGCTCGAAGCTGACCCTACATGTGGG
TGACGGTTTTGAGTTCATGAAACAGAATCAGGATGCCTTCGATGTGATCATCACTGACTCCTCAGACCCCATGGGCCCCG
CCGAAAGTCTCTTCAAGGAGTCCTATTACCAGCTCATGAAGACAGCTCTCAAGGAAGATGGTGTCCTCTGCTGCCAGGGC
GAGTGTCAGTGGCTGCACCTGGACCTCATCAAGGAGATGCGGCAGTTCTGCCAGTCCCTGTTCCCCGTGGTGGCCTACGC
CTACTGCACCATCCCCACCTACCCCAGCGGCCAGATCGGCTTCATGCTGTGCAGCAAGAACCCGAGCACCAACTTCCAGG
AGCCAGTGCAGCCACTGACGCAGCAGCAGGTGGCGCAGATGCAGCTGAAGTACTACAACTCCGACGTGCACCGCGCCGCC
TTCGTGCTGCCCGAGTTTGCCCGCAAGGCCCTGAATGATGTGAGCTGA
| Library | Parental gene expression (RPM) |
|---|---|
| SRP007412_brain_prefrontal_cortex | 38 .26 RPM |
| SRP007412_cerebellum | 6 .69 RPM |
| SRP007412_heart | 6 .41 RPM |
| SRP007412_kidney | 16 .18 RPM |
| SRP007412_liver | 15 .42 RPM |
| Species | Parental gene accession | Homology type | Retrogenes number | |
|---|---|---|---|---|
| Callithrix jacchus | ENSCJAG00000002354 | ortholog_one2one | 4 retrogenes | |
| Homo sapiens | ENSG00000116649 | ortholog_one2one | 2 retrogenes | |
| Gorilla gorilla | ENSGGOG00000014385 | ortholog_one2many | 1 retrogene | |
| Macropus eugenii | ENSMEUG00000007002 | ortholog_one2many | 2 retrogenes | |
| Macaca mulatta | ENSMMUG00000019321 | ortholog_one2one | 2 retrogenes | |
| Nomascus leucogenys | ENSNLEG00000009532 | ortholog_one2one | 3 retrogenes | |
| Pan troglodytes | ENSPTRG00000000138 | ortholog_one2one | 3 retrogenes |
| # | RetrogeneDB ID | Identity (%) | Coverage (%) | ORF conservation | Expression evidence | RDV |
|---|---|---|---|---|---|---|
| 1. | retro_pabe_1181 | 58.54 | 69.14 | Please wait, loading  | Please wait, loading | Please wait, loading |
| 2. | retro_pabe_1828 | 77.45 | 56.00 | Please wait, loading | Please wait, loading | Please wait, loading |
| 3. | retro_pabe_2044 | 75.00 | 56.57 | Please wait, loading | Please wait, loading | Please wait, loading |
Download FASTA sequences of all ENSPPYG00000001892 retrocopies