RetrogeneDB - Parental gene ENSCJAG00000002268 details

							
>ENSCJAG00000002268
ATGGCGGTTGGCAAGAACAAGCGCCTTACGAAAGGCGGTAAAAAGGGAGCCAAGAAGAAAGTGGTTGATCCATTTTCTAA

GAAAGATTGGTATGATGTGAAAGCACCCGCTATGTTCAATATAAGAAATATTGGAAAGACGCTAGTCACCAGGACCCAAG

GAACCAAAATTGCATCTGATGGCCTCAAGGGTCGAGTGTTTGAAGTTAGTCTTGCTGATTTGCAGAATGATGAAGTTGCA

TTTAGAAAATTCAAGCTGATTACTGAAGATGTTCAGGGCAAAAACTGCCTGACTAACTTCCATGGCATGGATCTTACCCG

TGACAAAATGTGTTCCATGGTCAAAAAATGGCAGACAATGATTGAAGCTCATGTTGATGTCAAGACTACCGATGGTTACT

TGCTTCGTCTGTTCTGTGTTGGTTTTACTAAAAAACGCAACAATCAGATACGGAAGACCTCTTATGCTCAGCACCAACAG

GTCCGCCAAATCCGGAAGAAGATGATGGAAATCATGACCCGAGAGGTGCAGACAAATGACTTGAAAGAAGTGGTCAATAA

ATTGATTCCAGACAGCATTGGGAAAGACATAGAAAAGGCTTGCCAATCTATTTATCCTCTCCATGATGTCTTCGTTAGAA

AAGTAAAAATGCTGAAGAAGCCCAAGTTTGAATTGGGAAAACTCATGGAGCTTCATGGTGAAGGCAGTAGTTCTGGAAAA

GCCACTGGGGATGAGACAGGTGCTAAAGTTGAACGAGCTGATGGATATGAACCACCAGTCCAAGAATCTGTTTAA

Library	Parental gene expression (RPM)
SRP051959_spleen	210 .59 RPM
SRP051959_skeletal_muscle	89 .97 RPM
SRP051959_lymph_node	217 .23 RPM
SRP051959_lung	131 .73 RPM
SRP051959_liver	155 .03 RPM
SRP051959_kidney	127 .15 RPM
SRP051959_heart	106 .70 RPM
SRP051959_colon	129 .26 RPM

Species	Parental gene accession	Homology type	Retrogenes number
Ailuropoda melanoleuca	ENSAMEG00000018425	ortholog_one2many	11 retrogenes	retro_amel_1333, retro_amel_1361, retro_amel_1380, retro_amel_1514, retro_amel_159, retro_amel_1697, retro_amel_1732, retro_amel_1739, retro_amel_230, retro_amel_367, retro_amel_863,
Bos taurus	ENSBTAG00000009908	ortholog_one2many	3 retrogenes	retro_btau_1284, retro_btau_1733, retro_btau_233,
Canis familiaris	ENSCAFG00000007990	ortholog_one2many	7 retrogenes	retro_cfam_103, retro_cfam_146, retro_cfam_169, retro_cfam_170, retro_cfam_179, retro_cfam_222, retro_cfam_77,
Dipodomys ordii	ENSDORG00000002250	possible_ortholog	10 retrogenes	retro_dord_142, retro_dord_168, retro_dord_193, retro_dord_209, retro_dord_229, retro_dord_314, retro_dord_380, retro_dord_752, retro_dord_757, retro_dord_95,
Erinaceus europaeus	ENSEEUG00000004994	possible_ortholog	4 retrogenes	retro_eeur_297, retro_eeur_510, retro_eeur_517, retro_eeur_66,
Homo sapiens	ENSG00000145425	possible_ortholog	40 retrogenes	retro_hsap_1080, retro_hsap_1178, retro_hsap_1320, retro_hsap_144, retro_hsap_1507, retro_hsap_1559, retro_hsap_1620, retro_hsap_1891, retro_hsap_1994, retro_hsap_2575, retro_hsap_2578, retro_hsap_2607, retro_hsap_2700, retro_hsap_274, retro_hsap_2803, retro_hsap_2908, retro_hsap_2909, retro_hsap_3020, retro_hsap_3112, retro_hsap_313, retro_hsap_3213, retro_hsap_3366, retro_hsap_3675, retro_hsap_3876, retro_hsap_3878, retro_hsap_3879, retro_hsap_3910, retro_hsap_3929, retro_hsap_3931, retro_hsap_4017, retro_hsap_4020, retro_hsap_4021, retro_hsap_588, retro_hsap_602, retro_hsap_613, retro_hsap_683, retro_hsap_789, retro_hsap_838, retro_hsap_888, retro_hsap_914,
Microcebus murinus	ENSMICG00000004921	possible_ortholog	9 retrogenes	retro_mmur_1230, retro_mmur_1289, retro_mmur_193, retro_mmur_299, retro_mmur_330, retro_mmur_526, retro_mmur_592, retro_mmur_626, retro_mmur_945,
Myotis lucifugus	ENSMLUG00000014788	possible_ortholog	8 retrogenes	retro_mluc_1197, retro_mluc_1397, retro_mluc_1568, retro_mluc_1846, retro_mluc_2130, retro_mluc_2158, retro_mluc_2388, retro_mluc_862,
Macaca mulatta	ENSMMUG00000021821	possible_ortholog	1 retrogene	retro_mmul_2297,
Monodelphis domestica	ENSMODG00000000969	ortholog_one2many	6 retrogenes	retro_mdom_1040, retro_mdom_1229, retro_mdom_1396, retro_mdom_1480, retro_mdom_627, retro_mdom_694,
Mus musculus	ENSMUSG00000028081	possible_ortholog	2 retrogenes	retro_mmus_218, retro_mmus_254,
Nomascus leucogenys	ENSNLEG00000005815	possible_ortholog	26 retrogenes	retro_nleu_1160, retro_nleu_1177, retro_nleu_1402, retro_nleu_1472, retro_nleu_1483, retro_nleu_1487, retro_nleu_1816, retro_nleu_1878, retro_nleu_1992, retro_nleu_209, retro_nleu_2437, retro_nleu_2567, retro_nleu_2571, retro_nleu_2753, retro_nleu_281, retro_nleu_2979, retro_nleu_3087, retro_nleu_443, retro_nleu_526, retro_nleu_654, retro_nleu_658, retro_nleu_758, retro_nleu_767, retro_nleu_799, retro_nleu_942, retro_nleu_962,
Oryctolagus cuniculus	ENSOCUG00000007011	possible_ortholog	1 retrogene	retro_ocun_257,
Rattus norvegicus	ENSRNOG00000011893	possible_ortholog	1 retrogene	retro_rnor_198,
Sarcophilus harrisii	ENSSHAG00000015088	ortholog_many2many	2 retrogenes	retro_shar_777, retro_shar_95,
Sus scrofa	ENSSSCG00000009019	possible_ortholog	3 retrogenes	retro_sscr_27, retro_sscr_749, retro_sscr_762,
Tupaia belangeri	ENSTBEG00000002963	possible_ortholog	98 retrogenes	retro_tbel_1005, retro_tbel_11, retro_tbel_1119, retro_tbel_116, retro_tbel_1232, retro_tbel_1318, retro_tbel_133, retro_tbel_137, retro_tbel_1375, retro_tbel_1378, retro_tbel_1383, retro_tbel_1417, retro_tbel_1421, retro_tbel_1509, retro_tbel_1686, retro_tbel_1698, retro_tbel_172, retro_tbel_1720, retro_tbel_1721, retro_tbel_1744, retro_tbel_1814, retro_tbel_1829, retro_tbel_1856, retro_tbel_1896, retro_tbel_1948, retro_tbel_1960, retro_tbel_1999, retro_tbel_206, retro_tbel_2200, retro_tbel_2306, retro_tbel_2463, retro_tbel_2483, retro_tbel_2510, retro_tbel_2626, retro_tbel_2654, retro_tbel_2657, retro_tbel_2745, retro_tbel_2759, retro_tbel_2760, retro_tbel_2764, retro_tbel_281, retro_tbel_2857, retro_tbel_2957, retro_tbel_2959, retro_tbel_3114, retro_tbel_317, retro_tbel_3212, retro_tbel_3255, retro_tbel_3259, retro_tbel_3299, retro_tbel_336, retro_tbel_3372, retro_tbel_3416, retro_tbel_3471, retro_tbel_3486, retro_tbel_3513, retro_tbel_3558, retro_tbel_3613, retro_tbel_3631, retro_tbel_3655, retro_tbel_3705, retro_tbel_373, retro_tbel_375, retro_tbel_3755, retro_tbel_3786, retro_tbel_3815, retro_tbel_3823, retro_tbel_3832, retro_tbel_386, retro_tbel_3882, retro_tbel_39, retro_tbel_3947, retro_tbel_3966, retro_tbel_399, retro_tbel_4116, retro_tbel_4144, retro_tbel_4147, retro_tbel_4211, retro_tbel_4220, retro_tbel_423, retro_tbel_4294, retro_tbel_4304, retro_tbel_4347, retro_tbel_438, retro_tbel_4428, retro_tbel_445, retro_tbel_4579, retro_tbel_598, retro_tbel_619, retro_tbel_623, retro_tbel_671, retro_tbel_859, retro_tbel_90, retro_tbel_912, retro_tbel_92, retro_tbel_928, retro_tbel_956, retro_tbel_973,
Vicugna pacos	ENSVPAG00000004235	ortholog_one2many	8 retrogenes	retro_vpac_253, retro_vpac_31, retro_vpac_322, retro_vpac_439, retro_vpac_486, retro_vpac_497, retro_vpac_529, retro_vpac_88,

#	RetrogeneDB ID	Identity (%)	Coverage (%)	ORF conservation	Expression evidence	RDV
1.	retro_cjac_2	94.32	100.00	Please wait, loading	Please wait, loading	Please wait, loading
2.	retro_cjac_21	96.59	100.00	Please wait, loading	Please wait, loading	Please wait, loading
3.	retro_cjac_78	99.62	100.00	Please wait, loading	Please wait, loading	Please wait, loading
4.	retro_cjac_249	100.00	100.00	Please wait, loading	Please wait, loading	Please wait, loading
5.	retro_cjac_312	92.42	100.00	Please wait, loading	Please wait, loading	Please wait, loading
6.	retro_cjac_337	100.00	100.00	Please wait, loading	Please wait, loading	Please wait, loading
7.	retro_cjac_368	95.83	100.00	Please wait, loading	Please wait, loading	Please wait, loading

Download FASTA sequences of all ENSCJAG00000002268 retrocopies

Parental gene:	ENSCJAG00000002268
Aliases:	None
Description:	None
Organism:	*Marmoset (Callithrix jacchus)*
Coordinates:	3:41519949..41525879(-)

Parental gene:

ENSCJAG00000002268