RetrogeneDB ID:

retro_tbel_671

Retrocopy
location
Organism:Treeshrew (Tupaia belangeri)
Coordinates:GeneScaffold_2710:536804..537595(-)
Located in intron of:ENSTBEG00000006247
Retrocopy
information
Ensembl ID:None
Aliases:None
Status:NOVEL
Parental gene
information
Parental gene summary:
Parental gene symbol:RPS3A
Ensembl ID:ENSTBEG00000002963
Aliases:None
Description:ribosomal protein S3A [Source:HGNC Symbol;Acc:10421]


Retrocopy-Parental alignment summary:






>retro_tbel_671
ATGGTGGTTGGCAAGAATAAGTGCCTTACAAAAGGCGGCAAAAAGGGAGACAAGAAGAAAGTGGTTGATCCATTTTCTAA
AAAAGATAGGTGTGACGTAAAAGCACCTGAGATGTTCAACTTAAGAAATATTGGGAAAACACTAGTTGCCAGGACTCAAA
GAACCAAAATTGTGTTTGACAGCCTTAAGGGCTGTGTGTTTGAAGTGAGCCTTGAAGATCTGCAGAACAATGAAGTCACA
TTTAGGAAATTCAAGCTAACTAGTGAGGATGTTCAGGGCAAAAGCTGCCTGACTAACTTCGCTGGCATGGATCTCACCCA
TGACAAAATGTATTCCATGGTCAAAAAATGACAGACCATGATTGAAGCTCATGTCAACATGAAGACTACCAATGGTTATT
TGCTTCATCTCTTCTGTGCTGGGTTTACTAAAAAACGCAACAATCAGATATGGAAGACCTCTTATGCCCAGCATCAGCAG
GTCCACCAAATCTGGAAGATGATGATGAAAATCATGACCTGGGAGATGCAGAAAAATGACTCGAAAGAAGTGGTCAATAA
ACTGATTCCAGATGGTACTGAAAAAGACGTAGAAAAGGCTTGCCAATCCATCTACCCTCTCCATGATGTCTTTGTCAGAA
AAGAAAAATGCTGAAGAAGCCCAAGTTTGAATTGGGAAAACTCATGGAGCTTCATGGTGAAGGTGGTAGCTCTGGGAAAG
CTACTGGGCTTGAGACAGGTGCCAAAGTGGAATAAGCTGAAGGATATGAATCACTAGCCCAAGAATCTGTT

ORF - retro_tbel_671 Open Reading Frame is not conserved.
Retrocopy - Parental Gene Alignment summary:
Percent Identity: 80.75 %
Parental protein coverage: 100. %
Number of stop codons detected: 2
Number of frameshifts detected 1


Retrocopy - Parental Gene Alignment:

ParentalMAVGKNKRLTKGGKKGAKKKVXDPFSKKDWYDVKAPAMFNIRNIGKTLVTRTQGTKIASDGLKGRVFEVS
M.VGKNK.LTKGGKKG.KKKV.DPFSKKD..DVKAP.MFN.RNIGKTLV.RTQ.TKI..D.LKG.VFEVS
RetrocopyMVVGKNKCLTKGGKKGDKKKVVDPFSKKDRCDVKAPEMFNLRNIGKTLVARTQRTKIVFDSLKGCVFEVS
ParentalLADLQNDEVAFRKFKLITEDVQGKNCLTNFHGMDLTRDKMCSMVKKWQTMIEAHVDVKTTDGYLLRLFCV
L.DLQN.EV.FRKFKL..EDVQGK.CLTNF.GMDLT.DKM.SMVKK.QTMIEAHV..KTT.GYLL.LFC.
RetrocopyLEDLQNNEVTFRKFKLTSEDVQGKSCLTNFAGMDLTHDKMYSMVKK*QTMIEAHVNMKTTNGYLLHLFCA
ParentalGFTKKRNNQIRKTSYAQHQQVRQIRKKMMEIMTREVQTNDLKEVVNKLIPDSIGKDIEKACQSIYPLHDV
GFTKKRNNQI.KTSYAQHQQV.QI.K.MM.IMT.E.Q.ND.KEVVNKLIPD...KD.EKACQSIYPLHDV
RetrocopyGFTKKRNNQIWKTSYAQHQQVHQIWKMMMKIMTWEMQKNDSKEVVNKLIPDGTEKDVEKACQSIYPLHDV
ParentalFVRKV-KMLKKPKFELGKLMELHGEGSSSGKATGDETGAKVERADGYEPPVQESV
FVRK..KMLKKPKFELGKLMELHGEG.SSGKATG.ETGAKVE.A.GYE...QESV
RetrocopyFVRKE<KMLKKPKFELGKLMELHGEGGSSGKATGLETGAKVE*AEGYESLAQESV