Parental gene: | RPS9, ENSCJAG00000001130 |
| Aliases: | None |
| Description: | None |
| Organism: | Marmoset (Callithrix jacchus) |
| Coordinates: | 22:45461811..45466043(+) |
>ENSCJAG00000001130
ATGCCAGTGGCCCGGAGCTGGGTTTGTCGCAAAACTTATGTGACCCCGCGGAGACCCTTCGAGAAATCTCGTCTCGACCA
AGAGCTGAAGCTGATCGGCGAGTATGGGCTTCGGAACAAACGTGAGGTCTGGAGGGTCAAGTTTACCCTGGCCAAGATCC
GCAAGGCCGCCCGAGAGCTGCTGACACTTGACGAGAAGGATCCACGGCGTCTTTTCGAAGGCAACGCCCTGCTGCGGCGG
CTGGTCCGCATTGGGGTGCTGGATGAGGGCAAGATGAAGCTGGATTACATCCTGGGCCTGAAGATTGAGGATTTCTTAGA
GAGACGTCTGCAGACCCAGGTCTTCAAGCTGGGCTTGGCCAAGTCCATCCACCACGCACGTGTACTGATCCGCCAGCGCC
ATATCAGGGTCCGCAAGCAGGTGGTGAACATCCCGTCCTTCATTGTCCGCCTGGATTCCCAGAAGCACATCGACTTCTCC
CTCCGCTCTCCCTACGGGGGTGGCCGCCCGGGCCGCGTGAAGAGGAAGAATGCCAAGAAGGGTCAGGGCGGGGCTGGGGC
TGGGGATGACGAGGAGGAGGATTAA
ATGCCAGTGGCCCGGAGCTGGGTTTGTCGCAAAACTTATGTGACCCCGCGGAGACCCTTCGAGAAATCTCGTCTCGACCA
AGAGCTGAAGCTGATCGGCGAGTATGGGCTTCGGAACAAACGTGAGGTCTGGAGGGTCAAGTTTACCCTGGCCAAGATCC
GCAAGGCCGCCCGAGAGCTGCTGACACTTGACGAGAAGGATCCACGGCGTCTTTTCGAAGGCAACGCCCTGCTGCGGCGG
CTGGTCCGCATTGGGGTGCTGGATGAGGGCAAGATGAAGCTGGATTACATCCTGGGCCTGAAGATTGAGGATTTCTTAGA
GAGACGTCTGCAGACCCAGGTCTTCAAGCTGGGCTTGGCCAAGTCCATCCACCACGCACGTGTACTGATCCGCCAGCGCC
ATATCAGGGTCCGCAAGCAGGTGGTGAACATCCCGTCCTTCATTGTCCGCCTGGATTCCCAGAAGCACATCGACTTCTCC
CTCCGCTCTCCCTACGGGGGTGGCCGCCCGGGCCGCGTGAAGAGGAAGAATGCCAAGAAGGGTCAGGGCGGGGCTGGGGC
TGGGGATGACGAGGAGGAGGATTAA
| Library | Parental gene expression (RPM) |
|---|---|
| SRP051959_spleen | 154 .60 RPM |
| SRP051959_skeletal_muscle | 146 .97 RPM |
| SRP051959_lymph_node | 225 .97 RPM |
| SRP051959_lung | 111 .63 RPM |
| SRP051959_liver | 114 .06 RPM |
| SRP051959_kidney | 78 .69 RPM |
| SRP051959_heart | 104 .40 RPM |
| SRP051959_colon | 102 .42 RPM |
| Species | Parental gene accession | Homology type | Retrogenes number | |
|---|---|---|---|---|
| Cavia porcellus | ENSCPOG00000020893 | ortholog_one2one | 2 retrogenes | |
| Gorilla gorilla | ENSGGOG00000027839 | possible_ortholog | 4 retrogenes | |
| Mustela putorius furo | ENSMPUG00000010394 | ortholog_one2one | 1 retrogene | |
| Nomascus leucogenys | ENSNLEG00000006314 | possible_ortholog | 1 retrogene | |
| Pan troglodytes | ENSPTRG00000011449 | possible_ortholog | 1 retrogene | |
| Rattus norvegicus | ENSRNOG00000011355 | ortholog_one2one | 7 retrogenes | |
| Rattus norvegicus | ENSRNOG00000049813 | possible_ortholog | 3 retrogenes |
| # | RetrogeneDB ID | Identity (%) | Coverage (%) | ORF conservation | Expression evidence | RDV |
|---|---|---|---|---|---|---|
| 1. | retro_cjac_719 | 77.44 | 100.00 | Please wait, loading  | Please wait, loading | Please wait, loading |
| 2. | retro_cjac_2034 | 76.36 | 56.19 | Please wait, loading | Please wait, loading | Please wait, loading |
| 3. | retro_cjac_2993 | 96.92 | 100.00 | Please wait, loading | Please wait, loading | Please wait, loading |
Download FASTA sequences of all ENSCJAG00000001130 retrocopies