Parental gene:

NAP1L1, ENSCJAG00000001115

Aliases:None
Description:nucleosome assembly protein 1-like 1 [Source:HGNC Symbol;Acc:7637]
Organism:Marmoset (Callithrix jacchus)
Coordinates:9:65717633..65756198(-)


>ENSCJAG00000001115
CTTTCTCACATCCACTACAAAGAACAGTCTGAACTTGATCAAGATTTGGATGATGTTGAAGAAGTAGAAGAAGAAGAAAC
TGGTGAAGAAACAAAAATCAAAGAAGCACGTCAGCTAACTGTTCAGATGATGCAAAATCCTCAGATTCTTGCAGCCCTTC
AAGAAAGACTTGATGGTCTGGTAGAAACACCAACAGGATACATTGAAAGCCTGCCTAGGGTAGTTAAAAGACGAGTGAAT
GCTCTCAAAAACCTGCAAGTTAAATGTGCACAGATAGAAGCCAAATTCTATGAGGAAGTTCACGATCTTGAAAGGAAGTA
TGCTGTTCTCTATCAGCCTCTATTTGATAAGCGATTTGAGATCATTAATGCAATTTATGAACCTACGGAAGAAGAATGTG
AATGGAAACCAGATGAAGAAGATGAGATTTCGGAGGAATTGAAAGAAAAGGCCAAGATTGAAGATGAGAAAAAGGATGAA
GAAAAAGAAGACCCCAAAGGAATTCCTGAATTTTGGTTAACGGTTTTTAAGAATGTTGACTTGCTCAGTGATATGGTTCA
GGAACATGATGAACCTATTCTGAAGCACTTGAAAGATATTAAAGTGAAGTTCTCAGATGCTGGCCAGCCTATGAGTTTTG
TCTTAGAATTTCACTTTGAACCCAATGAGTATTTTACAAATGAAGTGCTGACAAAGACATATAGGATGAGGTCAGAACCA
GATGATTCTGATCCCTTTTCTTTTGATGGACCAGAAATTATGGGTTGTACAGGGTGTCAGATAGATTGGAAAAAAGGAAA
GAATGTCACTTTGAAAACCATTAAGAAGAAGCAGAAACACAAGGGACGCGGGACAGTTCGTACTGTGACTAAAACAGTTT
CCAATGACTCTTTCTTTAATTTTTTTGCCCCTCCTGAAGTTCCCGAGAGTGGAGATCTGGATGATGATGCTGAAGCTATC
CTTGCTGCAGACTTCGAAATTGGTCACTTTTTACGTGAGCGTATAATCCCAAGATCAGTGTTATACTTTACTGGAGAAGC
TATTGAAGATGATGACGATGATTATGATGAAGAAGGTGAAGAAGCGGATGAGGAAGGGGAAGAAGAAGGAGATGAGGAAA
ATGATCCAGACTATGACCCGAAGAAGGATCAAAACCCAGCAGAGTGCAAGCAGCAGTGA

Library Parental gene expression (RPM)
SRP051959_spleen 92 .84 RPM
SRP051959_skeletal_muscle 80 .98 RPM
SRP051959_lymph_node 104 .52 RPM
SRP051959_lung 107 .41 RPM
SRP051959_liver 34 .33 RPM
SRP051959_kidney 72 .39 RPM
SRP051959_heart 82 .67 RPM
SRP051959_colon 47 .39 RPM



Species Parental gene accession Homology type Retrogenes number
Bos taurus ENSBTAG00000020908 possible_ortholog 8 retrogenes
retro_btau_1319, retro_btau_1324, retro_btau_1462, retro_btau_1487, retro_btau_474, retro_btau_652, retro_btau_70, retro_btau_935,
Choloepus hoffmanni ENSCHOG00000003210 possible_ortholog 2 retrogenes
retro_chof_1095, retro_chof_2057,
Felis catus ENSFCAG00000000279 ortholog_one2one 1 retrogene
retro_fcat_1037,
Homo sapiens ENSG00000187109 ortholog_one2one 3 retrogenes
retro_hsap_1199, retro_hsap_2696, retro_hsap_833,
Gorilla gorilla ENSGGOG00000003883 ortholog_one2one 3 retrogenes
retro_ggor_1879, retro_ggor_686, retro_ggor_934,
Macropus eugenii ENSMEUG00000013702 ortholog_one2many 2 retrogenes
retro_meug_1031, retro_meug_604,
Macaca mulatta ENSMMUG00000015583 possible_ortholog 1 retrogene
retro_mmul_233,
Monodelphis domestica ENSMODG00000020456 ortholog_many2many 4 retrogenes
retro_mdom_1476, retro_mdom_1638, retro_mdom_520, retro_mdom_724,
Mustela putorius furo ENSMPUG00000017474 ortholog_one2one 1 retrogene
retro_mputfur_505,
Mus musculus ENSMUSG00000058799 possible_ortholog 1 retrogene
retro_mmus_263,
Nomascus leucogenys ENSNLEG00000004682 ortholog_one2one 4 retrogenes
retro_nleu_1192, retro_nleu_2085, retro_nleu_265, retro_nleu_2766,
Otolemur garnettii ENSOGAG00000010319 ortholog_one2one 4 retrogenes
retro_ogar_1278, retro_ogar_1281, retro_ogar_3357, retro_ogar_666,
Pongo abelii ENSPPYG00000004786 possible_ortholog 2 retrogenes
retro_pabe_2287, retro_pabe_999,
Pan troglodytes ENSPTRG00000005240 ortholog_one2one 4 retrogenes
retro_ptro_1820, retro_ptro_582, retro_ptro_694, retro_ptro_819,
Pteropus vampyrus ENSPVAG00000016032 possible_ortholog 2 retrogenes
retro_pvam_1282, retro_pvam_306,
Rattus norvegicus ENSRNOG00000003890 possible_ortholog 1 retrogene
retro_rnor_150,
Ictidomys tridecemlineatus ENSSTOG00000003046 possible_ortholog 2 retrogenes
retro_itri_1007, retro_itri_416,
Vicugna pacos ENSVPAG00000007290 ortholog_one2one 3 retrogenes
retro_vpac_435, retro_vpac_441, retro_vpac_601,

# RetrogeneDB ID Identity (%) Coverage (%) ORF conservation Expression evidence RDV
1. retro_cjac_534 76.35 57.59
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Download FASTA sequences of all ENSCJAG00000001115 retrocopies