RetrogeneDB ID: | retro_ogar_1278 | ||
Retrocopylocation | Organism: | Bushbaby (Otolemur garnettii) | |
| Coordinates: | GL873541.1:11869260..11870425(+) | ||
| Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
| Aliases: | None | ||
| Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
| Parental gene symbol: | NAP1L1 | ||
| Ensembl ID: | ENSOGAG00000010319 | ||
| Aliases: | None | ||
| Description: | nucleosome assembly protein 1-like 1 [Source:HGNC Symbol;Acc:7637] |
Retrocopy-Parental alignment summary:
>retro_ogar_1278
ATGGCACACGTCGACAACAAAGAACAGTGTGAACTTCATCAAGATCTGGATGATGTTGAAGAAGTAGAAGAAGAAACTGG
TGAAGAAACAAAAATCAAAGTGCACCAGCTGACTGTTCAGATGATGCAAATCCTCAGATTCTTGCAGCCCTTCAAGAAAG
ACTGGATGGTCTGGTAGAAACACCACCAGGACACATCGAAAGCTTGCCTAGGGTCGTTAAAAGAGGAGTGAATGCTTCCC
CAAATCTTCAAGTTAAATGTGCACAGATAGAAGCCCAATTCTATGAGGAAGTTCATGATCTTGAAAGGAAGTATGCTGTT
CTCTATCCACCTCTACTTGACAAGCGATTTGAGATTATTAATGTGATTTATGAACCTACGGAAGAAGAATGTGAATGGAA
AGCAGATGAAGAAGACAAAATTTCAGAGGAGCTGCAAGAAAAGGCCAAGATTGAAGATGAGAAAAAGGATGAAGAAAAAG
ACGATCCCAAGGGAATTCCTGATGTTTGATTGACCGCTTTTAAGAATGTTGACTTGCTCAGTGATATGGTTCAGGAACAT
GATGAACATATTCTGAAGCACTTGAAAGACATGAAAGTCAAATTCTCAGATGCTGGCCAGCCTACAAGTTTCGTCTTAGA
TTTTCACTTTGAACCCAATGAATATTTCACAAATGAAGTATTGAAAAAGACATATAGGATGAGGTCAGAACCAGATGATT
CTGATCCCTTTTCTTTTGATGGACCAGAAATTATGGGTTGTACAGGGTACCAGATAGATTGGAAAAAAGGAAAGAATGTC
ACTTTGAAAACCATTAAGAAGAAGCAGAAACATAAGGGACGTGGGACAGTTGGTACTGTGACTAAAACAGTTTCCAATGA
CTCCTTTAATTTTTTTGCACCTCCTGAAGTTCCTGAAAGTGGAGATCTGGACAATGATGCTGAAGCTATTCTTGCTGCAG
ACCTTGAAATTGGTCACTTTTTACGTGAGCGTATAATCCCAAGATCAGTGTTCTATTTACTGGAGAAGCAATTGAAGAAG
ATGATGATGATTATGATGAAGAAGGTGAAGAAGCAGATGAGGAAGGGGAAGAAAAAGGAGCTGAGGAAAATGATCCAGAC
TATGACCCGAAGAAGGATCAAAATCCAGCAGAGTGCAAGCAGCAG
ATGGCACACGTCGACAACAAAGAACAGTGTGAACTTCATCAAGATCTGGATGATGTTGAAGAAGTAGAAGAAGAAACTGG
TGAAGAAACAAAAATCAAAGTGCACCAGCTGACTGTTCAGATGATGCAAATCCTCAGATTCTTGCAGCCCTTCAAGAAAG
ACTGGATGGTCTGGTAGAAACACCACCAGGACACATCGAAAGCTTGCCTAGGGTCGTTAAAAGAGGAGTGAATGCTTCCC
CAAATCTTCAAGTTAAATGTGCACAGATAGAAGCCCAATTCTATGAGGAAGTTCATGATCTTGAAAGGAAGTATGCTGTT
CTCTATCCACCTCTACTTGACAAGCGATTTGAGATTATTAATGTGATTTATGAACCTACGGAAGAAGAATGTGAATGGAA
AGCAGATGAAGAAGACAAAATTTCAGAGGAGCTGCAAGAAAAGGCCAAGATTGAAGATGAGAAAAAGGATGAAGAAAAAG
ACGATCCCAAGGGAATTCCTGATGTTTGATTGACCGCTTTTAAGAATGTTGACTTGCTCAGTGATATGGTTCAGGAACAT
GATGAACATATTCTGAAGCACTTGAAAGACATGAAAGTCAAATTCTCAGATGCTGGCCAGCCTACAAGTTTCGTCTTAGA
TTTTCACTTTGAACCCAATGAATATTTCACAAATGAAGTATTGAAAAAGACATATAGGATGAGGTCAGAACCAGATGATT
CTGATCCCTTTTCTTTTGATGGACCAGAAATTATGGGTTGTACAGGGTACCAGATAGATTGGAAAAAAGGAAAGAATGTC
ACTTTGAAAACCATTAAGAAGAAGCAGAAACATAAGGGACGTGGGACAGTTGGTACTGTGACTAAAACAGTTTCCAATGA
CTCCTTTAATTTTTTTGCACCTCCTGAAGTTCCTGAAAGTGGAGATCTGGACAATGATGCTGAAGCTATTCTTGCTGCAG
ACCTTGAAATTGGTCACTTTTTACGTGAGCGTATAATCCCAAGATCAGTGTTCTATTTACTGGAGAAGCAATTGAAGAAG
ATGATGATGATTATGATGAAGAAGGTGAAGAAGCAGATGAGGAAGGGGAAGAAAAAGGAGCTGAGGAAAATGATCCAGAC
TATGACCCGAAGAAGGATCAAAATCCAGCAGAGTGCAAGCAGCAG
ORF - retro_ogar_1278 Open Reading Frame is not conserved.
Retrocopy - Parental Gene Alignment summary:
| Percent Identity: | 84.73 % |
| Parental protein coverage: | 100. % |
| Number of stop codons detected: | 1 |
| Number of frameshifts detected | 2 |
Retrocopy - Parental Gene Alignment:
| Parental | LSDLENKEQCELDQDLDDVEEVEEEETGEETKIKARQLTVQMMQ-NPQILAALQERLDGLVETPTGYIES |
| .....NKEQCEL.QDLDDVEEVEEE.TGEETKIK..QLTVQMMQ.NPQILAALQERLDGLVETP.G.IES | |
| Retrocopy | MAHVDNKEQCELHQDLDDVEEVEEE-TGEETKIKVHQLTVQMMQ<NPQILAALQERLDGLVETPPGHIES |
| Parental | LPRVVKRRVNALKNLQVKCAQIEAKFYEEVHDLERKYAVLYQPLFDKRFEIINAIYEPTEEECEWKADEE |
| LPRVVKR.VNA..NLQVKCAQIEA.FYEEVHDLERKYAVLY.PL.DKRFEIIN.IYEPTEEECEWKADEE | |
| Retrocopy | LPRVVKRGVNASPNLQVKCAQIEAQFYEEVHDLERKYAVLYPPLLDKRFEIINVIYEPTEEECEWKADEE |
| Parental | DEISEELKEKAKIEDEKKDEEKEDPKGIPEFWLTVFKNVDLLSDMVQEHDEPILKHLKDIKVKFSDAGQP |
| D.ISEEL.EKAKIEDEKKDEEK.DPKGIP...LT.FKNVDLLSDMVQEHDE.ILKHLKD.KVKFSDAGQP | |
| Retrocopy | DKISEELQEKAKIEDEKKDEEKDDPKGIPDV*LTAFKNVDLLSDMVQEHDEHILKHLKDMKVKFSDAGQP |