Parental gene: | GSTP1, ENSCAFG00000011349 |
| Aliases: | None |
| Description: | Canis lupus familiaris glutathione S-transferase pi 1 (GSTP1), mRNA. [Source:RefSeq mRNA;Acc:NM_001252167] |
| Organism: | Dog (Canis familiaris) |
| Coordinates: | 18:49905160..49908182(-) |
>ENSCAFG00000011349
ATGCCACCCTACACCATCACCTACTTCCCTGTTCGAGGGCGCTGTGAGGCCATGCGCATGCTGCTGGCTGACCAGGGCCA
GAGCTGGAAGGAGGAGGTGGTGACCATGGAGACCTGGATGAAGGGCTCACTCAAGGCCTCCTGTCTGTACGGGCAGCTCC
CCAAGTTCCAGGACGGAGACCTCACCCTGTACCAGTCCAATGCCATCCTGCGACACCTGGGCCGCTCCCTTGGGCTCTAC
GGGAAGGACCAGCAGGAGGCGGCCTTGCTGGATGTAGTGAACGATGGTGTGGAGGATCTCCGCTGCAAATACGCCCTCCT
CATCTACACTAACTATGAGGCAGGAAAGGAGGAGTATGTGAAGGCACTACCAGGTTACCTGAAGCCTTTTGAAACGCTGT
TGTCCCAGAATGAGGGGGGCCAGGCCTTCATCGTGGGCAACCAGATCTCCTTCGCGGACTACAACCTGCTGGACTTGCTG
CTGATTCACCAGGTCCTGGCCCCCAGCTGCCTGGACTCCTTCCCCCTGCTCTCGGCCTATGTGGCGCGCCTCAGCGCCAG
ACCCAAGCTCAAGGCATTCCTGTCGTCCCCCGAGCACGTGAACCGCCCCATCAATGGCAACGGGAAGCAGTGA
ATGCCACCCTACACCATCACCTACTTCCCTGTTCGAGGGCGCTGTGAGGCCATGCGCATGCTGCTGGCTGACCAGGGCCA
GAGCTGGAAGGAGGAGGTGGTGACCATGGAGACCTGGATGAAGGGCTCACTCAAGGCCTCCTGTCTGTACGGGCAGCTCC
CCAAGTTCCAGGACGGAGACCTCACCCTGTACCAGTCCAATGCCATCCTGCGACACCTGGGCCGCTCCCTTGGGCTCTAC
GGGAAGGACCAGCAGGAGGCGGCCTTGCTGGATGTAGTGAACGATGGTGTGGAGGATCTCCGCTGCAAATACGCCCTCCT
CATCTACACTAACTATGAGGCAGGAAAGGAGGAGTATGTGAAGGCACTACCAGGTTACCTGAAGCCTTTTGAAACGCTGT
TGTCCCAGAATGAGGGGGGCCAGGCCTTCATCGTGGGCAACCAGATCTCCTTCGCGGACTACAACCTGCTGGACTTGCTG
CTGATTCACCAGGTCCTGGCCCCCAGCTGCCTGGACTCCTTCCCCCTGCTCTCGGCCTATGTGGCGCGCCTCAGCGCCAG
ACCCAAGCTCAAGGCATTCCTGTCGTCCCCCGAGCACGTGAACCGCCCCATCAATGGCAACGGGAAGCAGTGA
| Library | Parental gene expression (RPM) |
|---|---|
| SRP017611_brain | 43 .51 RPM |
| SRP017611_kidney | 292 .35 RPM |
| SRP017611_liver | 144 .95 RPM |
| SRP012049_cerebellum | 88 .32 RPM |
| Species | Parental gene accession | Homology type | Retrogenes number | |
|---|---|---|---|---|
| Ailuropoda melanoleuca | ENSAMEG00000001020 | ortholog_one2many | 3 retrogenes | |
| Canis familiaris | ENSCAFG00000019812 | within_species_paralog | 2 retrogenes | |
| Callithrix jacchus | ENSCJAG00000000879 | possible_ortholog | 1 retrogene | |
| Macropus eugenii | ENSMEUG00000001519 | ortholog_many2many | 2 retrogenes | |
| Myotis lucifugus | ENSMLUG00000011529 | possible_ortholog | 4 retrogenes | |
| Mustela putorius furo | ENSMPUG00000004029 | ortholog_one2many | 2 retrogenes | |
| Mus musculus | ENSMUSG00000038155 | possible_ortholog | 1 retrogene | |
| Oryctolagus cuniculus | ENSOCUG00000002230 | possible_ortholog | 1 retrogene | |
| Pteropus vampyrus | ENSPVAG00000008586 | ortholog_one2many | 6 retrogenes | |
| Rattus norvegicus | ENSRNOG00000018237 | possible_ortholog | 4 retrogenes | |
| Tursiops truncatus | ENSTTRG00000003746 | possible_ortholog | 1 retrogene | |
| Vicugna pacos | ENSVPAG00000008003 | possible_ortholog | 1 retrogene |
| # | RetrogeneDB ID | Identity (%) | Coverage (%) | ORF conservation | Expression evidence | RDV |
|---|---|---|---|---|---|---|
| 1. | retro_cfam_46 | 96.19 | 100.00 | Please wait, loading  | Please wait, loading | Please wait, loading |
| 2. | retro_cfam_143 | 97.13 | 99.52 | Please wait, loading | Please wait, loading | Please wait, loading |
| 3. | retro_cfam_617 | 98.57 | 100.00 | Please wait, loading | Please wait, loading | Please wait, loading |
| 4. | retro_cfam_2043 | 100.00 | 100.00 | Please wait, loading | Please wait, loading | Please wait, loading |
Download FASTA sequences of all ENSCAFG00000011349 retrocopies