RetrogeneDB ID: retro_mluc_629

Retrocopy location

• Organism: Microbat (Myotis lucifugus)
• Coordinates: GL429769:12198240..12198868(-)
• Located in intron of: None

Retrocopy information

• Ensembl ID: None
• Aliases: None
• Status: NOVEL

Parental gene information

• Parental gene symbol: GSTP1
• Ensembl ID: ENSMLUG00000011529
• Aliases: None
• Description: None

Sequence

>retro_mluc_629
ATGGTGCCCTACACCATCATCTGCTTCCCTATTCGAGGGCATTGTGAGGCCACGCACATGCTGCTGGCTGACCAGGGCCA
GAGCTGGAAGGAGGAGGTGGTGACCAAGGAGACCTGGCTGCAGGGCTCCCTTAAGGCCTCCTGTCTGTACGGGAAGCTCC
CCAAGTTCCAGGACGGGGACCTGACCCTGTACCAGTCCAATGCCATCCTGTGACACCTGGGCCGCTCCCTCGGGCTGTAT
GGGAAGGACCAGCGCGAGGCGGCCCTGGTGAACGTGGTGAAGACGGCGTGGAGGACCTCCGCTGCAAATATGCCACCCTC
ATTTACACCAACTATGAGGCAGGCAAGGAGGACTACGTGAAGGAGCTGCCGGGGTGCCTGAAGCCTTTTGAGACCCTGCT
CTCCCAGAACCAGGGGCCCAGGCCTTCATCATGGGCAACCAGATCTCCTTCACGGACTACAACCTGCTAGACTTGCTGCT
GATTCACCAGGTCCTGGCCCCCGGCTGCCTGGACTCCCTCCCCCTGCTTTCAGCCTGTGTGTCTCACCTCAGTGCCCAAC
CCAAGCTCAAGGCCTTCCTGGCCTCCCTGGAGCACGTGAACTGCCCCATCAATGGCAATGGGAAACAG

Alignment

ORF - retro_mluc_629 Open Reading Frame is not conserved.

Retrocopy - Parental Gene Alignment summary:

• Percent Identity: 88.21 %
• Parental protein coverage: 100. %
• Number of stop codons detected: 1
• Number of frameshifts detected: 2

Retrocopy - Parental Gene Alignment:

Parental  VAPYTIVYFPVRGRCEATRMLLADQGQSWKEEVVTKDTWMQGTLKASCLYGQLPKFQDGDLTLYQSNAIL
          ..PYTI..FP.RG.CEAT.MLLADQGQSWKEEVVTK.TW.QG.LKASCLYG.LPKFQDGDLTLYQSNAIL
Retrocopy MVPYTIICFPIRGHCEATHMLLADQGQSWKEEVVTKETWLQGSLKASCLYGKLPKFQDGDLTLYQSNAIL

Parental  RHLGRSLGLYGKDQREAALVDVV-NDGVEDLRCKYATLIYTNYEAGKEDYVKELPGRLKPFETLLSQNQ-
          .HLGRSLGLYGKDQREAALV.VV..DGVEDLRCKYATLIYTNYEAGKEDYVKELPG.LKPFETLLSQNQ.
Retrocopy *HLGRSLGLYGKDQREAALVNVV<EDGVEDLRCKYATLIYTNYEAGKEDYVKELPGCLKPFETLLSQNQ<

Parental  GGQAFIVGNQISFADYNLLDLLLIHQVLAPGCLDSLPLLSAYVSRLSARPKLKAFLASPEHVNRPINGNG
          G.QAFI.GNQISF.DYNLLDLLLIHQVLAPGCLDSLPLLSA.VS.LSA.PKLKAFLAS.EHVN.PINGNG
Retrocopy GAQAFIMGNQISFTDYNLLDLLLIHQVLAPGCLDSLPLLSACVSHLSAQPKLKAFLASLEHVNCPINGNG

Parental  KQ
          KQ
Retrocopy KQ

Legend:

• *: Stop codon
• >: Forward frameshift by one nucleotide
• <: Reverse frameshift by one nucleotide

Expression

RNA-Seq

Myotis lucifugus was not studied using RNA-Seq expression data.

ChIP-Seq

Myotis lucifugus was not studied using ChIP-Seq data.

EST

Myotis lucifugus was not studied using EST data.

TSS

Myotis lucifugus was not studied using FANTOM5 data.

Lab

retro_mluc_629 was not experimentally validated.

Homology

Retrocopy orthology:

Myotis lucifugus does not belong to any of the species groups (eutheria, teleost or neognath), studied for retrocopy-based homology. For more information about studied groups, please go to help section.

---

Parental genes homology:

Parental genes homology involve 7 parental genes, and 20 retrocopies.

Species	Parental gene accession	Retrocopies number
Ailuropoda melanoleuca	ENSAMEG00000001020	3 retrocopies	retro_amel_1921, retro_amel_249, retro_amel_778,
Canis familiaris	ENSCAFG00000011349	4 retrocopies	retro_cfam_143, retro_cfam_2043, retro_cfam_46, retro_cfam_617,
Macropus eugenii	ENSMEUG00000001519	2 retrocopies	retro_meug_1519, retro_meug_1762,
Myotis lucifugus	ENSMLUG00000011529	4 retrocopies	retro_mluc_1669, retro_mluc_1714, retro_mluc_1962, retro_mluc_629 ,
Mustela putorius furo	ENSMPUG00000004029	2 retrocopies	retro_mputfur_1215, retro_mputfur_1463,
Mus musculus	ENSMUSG00000038155	1 retrocopy	retro_mmus_521,
Rattus norvegicus	ENSRNOG00000018237	4 retrocopies	retro_rnor_2140, retro_rnor_2567, retro_rnor_2842, retro_rnor_769,