Parental gene: | ENSCAFG00000010127 |
| Aliases: | SNRPN, SNURF |
| Description: | Small nuclear ribonucleoprotein-associated protein [Source:UniProtKB/TrEMBL;Acc:E2RPQ0] |
| Organism: | Dog (Canis familiaris) |
| Coordinates: | 3:35837717..35853293(-) |
>ENSCAFG00000010127
ATGACTGTTGGAAAGAGCAGCAAGATGCTGCAGCACATTGACTATAGAATGAGATGTATCTTGCAAGATGGCCGAATCTT
CATTGGCACCTTTAAGGCTTTTGACAAGCATATGAACTTGATCCTCTGCGATTGTGATGAATTCAGGAAGATCAAGCCAA
AGAATGCGAAGCAGCCAGAGCGTGAAGAAAAGCGTGTTTTGGGTCTCGTGTTACTACGTGGAGAGAACTTGGTTTCCATG
ACTGTGGAAGGACCACCCCCCAAAGATACTGGCATTGCTCGAGTACCACTTGCTGGAGCTGCAGGAGGTCCTGGGGTTGG
GAGGGCAGCTGGCAGAGGAGTTCCAGCTGGTGTTCCAATTCCCCAGGCTCCTGCTGGATTAGCAGGCCCTGTCCGAGGGG
TTGGGGGACCATCCCAACAGGTAATGACTCCACAGGGAAGAGGAACTGTAGCAGCGGCTGCAGTTGCTGCTACTGCCAGC
ATTGCTGGGGCCCCAACTCAATACCCACCAGGACGGGGGACCCCACCCACTCCTGTAGGGCGAGCAACACCACCTCCAGG
CATTATGGCTCCTCCACCTGGTATGAGACCACCTATGGGCCCACCAATTGGGCTTCCGCCTGCTCGAGGGACGCCTATAG
GCATGCCCCCTCCAGGAATGAGACCCCCTCCACCAGGAATTAGAGGTCCACCTCCCCCAGGAATGCGTCCACCAAGACCC
TAG
ATGACTGTTGGAAAGAGCAGCAAGATGCTGCAGCACATTGACTATAGAATGAGATGTATCTTGCAAGATGGCCGAATCTT
CATTGGCACCTTTAAGGCTTTTGACAAGCATATGAACTTGATCCTCTGCGATTGTGATGAATTCAGGAAGATCAAGCCAA
AGAATGCGAAGCAGCCAGAGCGTGAAGAAAAGCGTGTTTTGGGTCTCGTGTTACTACGTGGAGAGAACTTGGTTTCCATG
ACTGTGGAAGGACCACCCCCCAAAGATACTGGCATTGCTCGAGTACCACTTGCTGGAGCTGCAGGAGGTCCTGGGGTTGG
GAGGGCAGCTGGCAGAGGAGTTCCAGCTGGTGTTCCAATTCCCCAGGCTCCTGCTGGATTAGCAGGCCCTGTCCGAGGGG
TTGGGGGACCATCCCAACAGGTAATGACTCCACAGGGAAGAGGAACTGTAGCAGCGGCTGCAGTTGCTGCTACTGCCAGC
ATTGCTGGGGCCCCAACTCAATACCCACCAGGACGGGGGACCCCACCCACTCCTGTAGGGCGAGCAACACCACCTCCAGG
CATTATGGCTCCTCCACCTGGTATGAGACCACCTATGGGCCCACCAATTGGGCTTCCGCCTGCTCGAGGGACGCCTATAG
GCATGCCCCCTCCAGGAATGAGACCCCCTCCACCAGGAATTAGAGGTCCACCTCCCCCAGGAATGCGTCCACCAAGACCC
TAG
| Library | Parental gene expression (RPM) |
|---|---|
| SRP017611_brain | 300 .58 RPM |
| SRP017611_kidney | 99 .58 RPM |
| SRP017611_liver | 11 .67 RPM |
| SRP012049_cerebellum | 274 .63 RPM |
| Species | Parental gene accession | Homology type | Retrogenes number | |
|---|---|---|---|---|
| Ailuropoda melanoleuca | ENSAMEG00000007034 | ortholog_one2one | 3 retrogenes | |
| Bos taurus | ENSBTAG00000008251 | ortholog_one2many | 1 retrogene | |
| Canis familiaris | ENSCAFG00000006693 | within_species_paralog | 3 retrogenes | |
| Choloepus hoffmanni | ENSCHOG00000001846 | ortholog_one2many | 2 retrogenes | |
| Cavia porcellus | ENSCPOG00000020270 | ortholog_one2many | 1 retrogene | |
| Felis catus | ENSFCAG00000022298 | ortholog_one2many | 2 retrogenes | |
| Homo sapiens | ENSG00000128739 | ortholog_one2many | 1 retrogene | |
| Gorilla gorilla | ENSGGOG00000003988 | ortholog_one2many | 1 retrogene | |
| Loxodonta africana | ENSLAFG00000009458 | ortholog_one2many | 1 retrogene | |
| Myotis lucifugus | ENSMLUG00000023361 | ortholog_many2many | 3 retrogenes | |
| Macaca mulatta | ENSMMUG00000023139 | ortholog_one2many | 1 retrogene | |
| Mustela putorius furo | ENSMPUG00000014638 | ortholog_one2one | 1 retrogene | |
| Mus musculus | ENSMUSG00000000948 | ortholog_one2many | 3 retrogenes | |
| Oryctolagus cuniculus | ENSOCUG00000003532 | ortholog_many2many | 4 retrogenes | |
| Otolemur garnettii | ENSOGAG00000007392 | ortholog_one2many | 5 retrogenes | |
| Pongo abelii | ENSPPYG00000006269 | ortholog_one2many | 1 retrogene | |
| Pan troglodytes | ENSPTRG00000006826 | ortholog_one2many | 1 retrogene | |
| Rattus norvegicus | ENSRNOG00000015976 | ortholog_one2many | 6 retrogenes | |
| Sus scrofa | ENSSSCG00000028124 | ortholog_one2many | 2 retrogenes | |
| Ictidomys tridecemlineatus | ENSSTOG00000001339 | ortholog_one2many | 1 retrogene | |
| Tursiops truncatus | ENSTTRG00000010966 | ortholog_one2many | 5 retrogenes |
| # | RetrogeneDB ID | Identity (%) | Coverage (%) | ORF conservation | Expression evidence | RDV |
|---|---|---|---|---|---|---|
| 1. | retro_cfam_627 | 70.07 | 58.75 | Please wait, loading  | Please wait, loading | Please wait, loading |
| 2. | retro_cfam_682 | 86.36 | 100.00 | Please wait, loading | Please wait, loading | Please wait, loading |
| 3. | retro_cfam_752 | 58.52 | 70.42 | Please wait, loading | Please wait, loading | Please wait, loading |
| 4. | retro_cfam_1753 | 72.44 | 63.33 | Please wait, loading | Please wait, loading | Please wait, loading |
| 5. | retro_cfam_1874 | 81.89 | 52.08 | Please wait, loading | Please wait, loading | Please wait, loading |
| 6. | retro_cfam_2039 | 72.44 | 63.33 | Please wait, loading | Please wait, loading | Please wait, loading |
Download FASTA sequences of all ENSCAFG00000010127 retrocopies