Parental gene: | SRSF3, ENSBTAG00000040006 |
| Aliases: | SRSF3, SFRS3 |
| Description: | Serine/arginine-rich splicing factor 3 [Source:UniProtKB/Swiss-Prot;Acc:Q3SZR8] |
| Organism: | Cow (Bos taurus) |
| Coordinates: | 23:10481197..10487651(+) |
>ENSBTAG00000040006
ATGCATCGTGATTCCTGTCCATTGGACTGTAAAGTTTATGTAGGTAATCTTGGAAACAATGGTAACAAGACTGAATTGGA
ACGAGCTTTTGGCTATTATGGACCACTCCGAAGTGTGTGGGTTGCTAGAAACCCTCCCGGCTTTGCTTTTGTTGAATTTG
AAGATCCCCGAGACGCAGCTGATGCTGTCCGAGAGCTAGATGGGAGAACACTCTGTGGCTGCCGAGTAAGAGTGGAACTA
TCGAATGGTGAAAAGAGAAGTCGTAATCGTGGCCCACCTCCTTCTTGGGGTCGTCGCCCTCGAGATGATTATCGGAGGAG
GAGTCCTCCACCTCGACGCAGATCTCCAAGACGGAGAAGCTTCTCCCGCAGCCGGAGCAGGTCCCTTTCTAGAGATAGGA
GAAGAGAGAGATCACTGTCCCGGGAGAGAAATCACAAGCCGTCCCGATCTTTCTCTAGGTCTCGTAGCCGATCTAGGTCA
AATGAAAGGAAATAG
ATGCATCGTGATTCCTGTCCATTGGACTGTAAAGTTTATGTAGGTAATCTTGGAAACAATGGTAACAAGACTGAATTGGA
ACGAGCTTTTGGCTATTATGGACCACTCCGAAGTGTGTGGGTTGCTAGAAACCCTCCCGGCTTTGCTTTTGTTGAATTTG
AAGATCCCCGAGACGCAGCTGATGCTGTCCGAGAGCTAGATGGGAGAACACTCTGTGGCTGCCGAGTAAGAGTGGAACTA
TCGAATGGTGAAAAGAGAAGTCGTAATCGTGGCCCACCTCCTTCTTGGGGTCGTCGCCCTCGAGATGATTATCGGAGGAG
GAGTCCTCCACCTCGACGCAGATCTCCAAGACGGAGAAGCTTCTCCCGCAGCCGGAGCAGGTCCCTTTCTAGAGATAGGA
GAAGAGAGAGATCACTGTCCCGGGAGAGAAATCACAAGCCGTCCCGATCTTTCTCTAGGTCTCGTAGCCGATCTAGGTCA
AATGAAAGGAAATAG
| Library | Parental gene expression (RPM) |
|---|---|
| SRP017611_brain | 18 .00 RPM |
| SRP017611_kidney | 49 .79 RPM |
| SRP017611_liver | 21 .14 RPM |
| ERP005899_muscle | 60 .92 RPM |
| ERP005899_liver | 57 .68 RPM |
| SRP030211_testis | 77 .70 RPM |
| Species | Parental gene accession | Homology type | Retrogenes number | |
|---|---|---|---|---|
| Bos taurus | ENSBTAG00000012792 | other_paralog | 1 retrogene | |
| Callithrix jacchus | ENSCJAG00000016062 | ortholog_one2many | 5 retrogenes | |
| Homo sapiens | ENSG00000112081 | ortholog_one2one | 4 retrogenes | |
| Loxodonta africana | ENSLAFG00000018193 | ortholog_one2one | 2 retrogenes | |
| Microcebus murinus | ENSMICG00000004674 | ortholog_one2one | 5 retrogenes | |
| Myotis lucifugus | ENSMLUG00000010671 | ortholog_one2many | 6 retrogenes | |
| Mustela putorius furo | ENSMPUG00000014215 | ortholog_one2one | 1 retrogene | |
| Mus musculus | ENSMUSG00000071172 | ortholog_one2one | 9 retrogenes | |
| Otolemur garnettii | ENSOGAG00000000502 | possible_ortholog | 6 retrogenes | |
| Ochotona princeps | ENSOPRG00000006006 | ortholog_one2one | 3 retrogenes | |
| Rattus norvegicus | ENSRNOG00000000520 | ortholog_one2one | 11 retrogenes | |
| Sus scrofa | ENSSSCG00000001564 | ortholog_one2one | 1 retrogene | |
| Ictidomys tridecemlineatus | ENSSTOG00000014280 | ortholog_one2one | 5 retrogenes | |
| Tarsius syrichta | ENSTSYG00000013498 | ortholog_one2one | 3 retrogenes | |
| Tursiops truncatus | ENSTTRG00000013447 | ortholog_one2one | 11 retrogenes | |
| Vicugna pacos | ENSVPAG00000005481 | ortholog_one2one | 1 retrogene |
| # | RetrogeneDB ID | Identity (%) | Coverage (%) | ORF conservation | Expression evidence | RDV |
|---|---|---|---|---|---|---|
| 1. | retro_btau_1176 | 66.41 | 76.83 | Please wait, loading  | Please wait, loading | Please wait, loading |
| 2. | retro_btau_1442 | 99.39 | 100.00 | Please wait, loading | Please wait, loading | Please wait, loading |
| 3. | retro_btau_1445 | 82.42 | 99.39 | Please wait, loading | Please wait, loading | Please wait, loading |
| 4. | retro_btau_1665 | 77.56 | 94.51 | Please wait, loading | Please wait, loading | Please wait, loading |
| 5. | retro_btau_1813 | 67.91 | 80.49 | Please wait, loading | Please wait, loading | Please wait, loading |
Download FASTA sequences of all ENSBTAG00000040006 retrocopies