RetrogeneDB - Parental gene ENSBTAG00000033080 details

							
>ENSBTAG00000033080
ATGGGCGCCTACAAGTACATCCAGGAGCTGTGGAGGAAGAAGCAGTCGGACGTGATGCGCTTCCTGCTGCGGGTGCGCTG

CTGGCAGTACCGCCAGCTCTCGGCGCTGCACCGCGCCCCGCGCCCCACCCGGCCCGACAAGGCGCGCAGGCTGGGCTACA

AGGCCAAACAAGGCTATGTCATATACCGGATCCGTGTGCGCCGCGGGGGCCGCAAACGCCCAGTTCCTAAGGGTGCCACC

TACGGCAAGCCTGTCCACCATGGTGTCAACCAGCTCAAGTTTGCTCGAAGCCTGCAGTCGGTTGCGGAGGAGCGTGCTGG

CCGCCACTGTGGGGCCCTGAGGGTCCTGAATTCCTACTGGGTTGGTGAAGATTCTACGTACAAATTCTTTGAGGTTATCC

TCATTGATCCATTCCATAAAGCTATCAGAAGAAACCCTGACACCCAATGGATCACCAAACCAGTGCATAAGCACAGGGAG

ATGCGGGGGCTGACGTCTGCAGGCAGAAAGAGCCGCGGCCTGGGCAAGGGTCACAAGTTCCACCACACTATTGGTGGCTC

TCGCCGCGCAGCGTGGAGAAGGCGCAATACTCTCCAGCTCCACCGCTACCGCTAA

Library	Parental gene expression (RPM)
SRP017611_brain	45 .36 RPM
SRP017611_kidney	55 .89 RPM
SRP017611_liver	34 .28 RPM
ERP005899_muscle	465 .86 RPM
ERP005899_liver	26 .17 RPM
SRP030211_testis	106 .08 RPM

Species	Parental gene accession	Homology type	Retrogenes number
Canis familiaris	ENSCAFG00000005764	possible_ortholog	5 retrogenes	retro_cfam_1003, retro_cfam_1159, retro_cfam_1630, retro_cfam_572, retro_cfam_656,
Cavia porcellus	ENSCPOG00000002253	possible_ortholog	4 retrogenes	retro_cpor_620, retro_cpor_807, retro_cpor_900, retro_cpor_978,
Erinaceus europaeus	ENSEEUG00000011286	possible_ortholog	5 retrogenes	retro_eeur_200, retro_eeur_28, retro_eeur_400, retro_eeur_685, retro_eeur_694,
Echinops telfairi	ENSETEG00000015044	possible_ortholog	4 retrogenes	retro_etel_1438, retro_etel_431, retro_etel_658, retro_etel_943,
Felis catus	ENSFCAG00000026237	possible_ortholog	6 retrogenes	retro_fcat_1820, retro_fcat_285, retro_fcat_306, retro_fcat_610, retro_fcat_930, retro_fcat_985,
Homo sapiens	ENSG00000174748	ortholog_one2many	14 retrogenes	retro_hsap_1294, retro_hsap_1804, retro_hsap_2160, retro_hsap_2870, retro_hsap_2927, retro_hsap_3095, retro_hsap_3422, retro_hsap_3661, retro_hsap_3792, retro_hsap_592, retro_hsap_631, retro_hsap_791, retro_hsap_930, retro_hsap_957,
Gorilla gorilla	ENSGGOG00000024274	possible_ortholog	13 retrogenes	retro_ggor_1327, retro_ggor_1611, retro_ggor_1716, retro_ggor_1989, retro_ggor_2029, retro_ggor_2125, retro_ggor_2314, retro_ggor_2473, retro_ggor_39, retro_ggor_524, retro_ggor_552, retro_ggor_654, retro_ggor_771,
Loxodonta africana	ENSLAFG00000004155	possible_ortholog	1 retrogene	retro_lafr_677,
Macropus eugenii	ENSMEUG00000014522	possible_ortholog	3 retrogenes	retro_meug_1678, retro_meug_2006, retro_meug_2112,
Myotis lucifugus	ENSMLUG00000013809	possible_ortholog	15 retrogenes	retro_mluc_1357, retro_mluc_1709, retro_mluc_1720, retro_mluc_2052, retro_mluc_2142, retro_mluc_2454, retro_mluc_425, retro_mluc_623, retro_mluc_701, retro_mluc_714, retro_mluc_748, retro_mluc_749, retro_mluc_907, retro_mluc_943, retro_mluc_99,
Macaca mulatta	ENSMMUG00000006353	possible_ortholog	1 retrogene	retro_mmul_209,
Monodelphis domestica	ENSMODG00000014880	ortholog_one2many	3 retrogenes	retro_mdom_1315, retro_mdom_1803, retro_mdom_918,
Mustela putorius furo	ENSMPUG00000012148	possible_ortholog	7 retrogenes	retro_mputfur_1011, retro_mputfur_1252, retro_mputfur_1291, retro_mputfur_314, retro_mputfur_346, retro_mputfur_658, retro_mputfur_669,
Mus musculus	ENSMUSG00000012405	possible_ortholog	2 retrogenes	retro_mmus_118, retro_mmus_8,
Nomascus leucogenys	ENSNLEG00000003580	possible_ortholog	1 retrogene	retro_nleu_80,
Oryctolagus cuniculus	ENSOCUG00000010961	possible_ortholog	2 retrogenes	retro_ocun_215, retro_ocun_228,
Otolemur garnettii	ENSOGAG00000013056	possible_ortholog	13 retrogenes	retro_ogar_1066, retro_ogar_1129, retro_ogar_1182, retro_ogar_1453, retro_ogar_1483, retro_ogar_1629, retro_ogar_1809, retro_ogar_2378, retro_ogar_270, retro_ogar_3058, retro_ogar_3096, retro_ogar_3349, retro_ogar_903,
Procavia capensis	ENSPCAG00000011995	possible_ortholog	1 retrogene	retro_pcap_265,
Rattus norvegicus	ENSRNOG00000008140	possible_ortholog	17 retrogenes	retro_rnor_1046, retro_rnor_1409, retro_rnor_1497, retro_rnor_1685, retro_rnor_1690, retro_rnor_1785, retro_rnor_2042, retro_rnor_2249, retro_rnor_2313, retro_rnor_2451, retro_rnor_2473, retro_rnor_2786, retro_rnor_2997, retro_rnor_428, retro_rnor_66, retro_rnor_710, retro_rnor_844,
Sus scrofa	ENSSSCG00000028079	possible_ortholog	5 retrogenes	retro_sscr_1219, retro_sscr_1225, retro_sscr_448, retro_sscr_968, retro_sscr_997,
Ictidomys tridecemlineatus	ENSSTOG00000011153	possible_ortholog	4 retrogenes	retro_itri_1445, retro_itri_1838, retro_itri_479, retro_itri_785,
Tupaia belangeri	ENSTBEG00000009843	possible_ortholog	34 retrogenes	retro_tbel_1031, retro_tbel_1072, retro_tbel_1322, retro_tbel_1346, retro_tbel_1363, retro_tbel_1524, retro_tbel_1668, retro_tbel_1931, retro_tbel_1980, retro_tbel_2035, retro_tbel_2212, retro_tbel_2270, retro_tbel_2453, retro_tbel_2634, retro_tbel_2818, retro_tbel_3196, retro_tbel_3208, retro_tbel_3387, retro_tbel_3449, retro_tbel_352, retro_tbel_3936, retro_tbel_4079, retro_tbel_4417, retro_tbel_4433, retro_tbel_4477, retro_tbel_4564, retro_tbel_4705, retro_tbel_476, retro_tbel_555, retro_tbel_727, retro_tbel_746, retro_tbel_84, retro_tbel_929, retro_tbel_992,
Tursiops truncatus	ENSTTRG00000007244	ortholog_one2many	5 retrogenes	retro_ttru_1305, retro_ttru_1358, retro_ttru_280, retro_ttru_920, retro_ttru_987,

#	RetrogeneDB ID	Identity (%)	Coverage (%)	ORF conservation	Expression evidence	RDV
1.	retro_btau_152	99.51	100.00	Please wait, loading	Please wait, loading	Please wait, loading
2.	retro_btau_201	99.51	100.00	Please wait, loading	Please wait, loading	Please wait, loading

Download FASTA sequences of all ENSBTAG00000033080 retrocopies

Parental gene:	RPL15, ENSBTAG00000033080
Aliases:	None
Description:	60S ribosomal protein L15 [Source:UniProtKB/Swiss-Prot;Acc:Q5EAD6]
Organism:	*Cow (Bos taurus)*
Coordinates:	27:41930645..41934590(-)

Parental gene:

RPL15, ENSBTAG00000033080