RetrogeneDB ID:

retro_ogar_2378

Retrocopy
location
Organism:Bushbaby (Otolemur garnettii)
Coordinates:GL873617.1:3609466..3610078(-)
Located in intron of:None
Retrocopy
information
Ensembl ID:ENSOGAG00000034568
Aliases:None
Status:KNOWN_PSEUDOGENE
Parental gene
information
Parental gene summary:
Parental gene symbol:None
Ensembl ID:ENSOGAG00000013056
Aliases:None
Description:None


Retrocopy-Parental alignment summary:






>retro_ogar_2378
ATGGGTGCATACAAGTACATCCAGGAGCTGTGGAGGAAGAAGCAGTCTGATGTGATGCGCTTTCTTCTGAGGGTCCGCTG
CTGGCAGTACCGCCAGCTCTCTGCGCTCCGTAGGGCTCCCCACCCAACCCGGCCAGATAAAGCGCGCAGACTGGGATACA
AGGCTAAGCAAGGTTATGTCATATACAGGATTCGTGTGCGCCGCGGTGCCCGCAAACGCCCAGTTCCTAAGGGTGCAACC
TATGGCAAGCCTGTGCATCATGGTGTTAACCAGCTAAAGTTTGCTCGAAGTCTTCAGTCTGTTGCTGAGAAGCGAGCTGG
ACGCCACTGTGGGGCTCTAAGAGTCCTGAATTCTTACTGGGTTGGTGAAGATTCAACATACAAATTTTTTGAGGTTATCC
TGATTGATCCATTCCATAAAGCTATCAGAAGAAATCCTGACACCCTGTGGATCACCAAACCAGTCCACAAGCACAGGGAG
ATGCGTGGGCTGACATCTGCAGGCCGAAAGAGCCGTGGCCTTGGAAAGGGCCATAAATTCCACCACACTATTGGTGGTTC
CCACCGTGCAGCTTGGAGAAGACGCAATACCCTCCAGCTCCACCGTTACCGC

ORF - retro_ogar_2378 Open Reading Frame is conserved.
Retrocopy - Parental Gene Alignment summary:
Percent Identity: 97.06 %
Parental protein coverage: 100. %
Number of stop codons detected: 0
Number of frameshifts detected 0


Retrocopy - Parental Gene Alignment:

ParentalMGAYKYIQELWRKKQSDVMRFLLRVRCWQYRQLSALHRAPRPTRPDKARRLGYKAKQGYVIYRIRVRRGG
MGAYKYIQELWRKKQSDVMRFLLRVRCWQYRQLSAL.RAP.PTRPDKARRLGYKAKQGYVIYRIRVRRG.
RetrocopyMGAYKYIQELWRKKQSDVMRFLLRVRCWQYRQLSALRRAPHPTRPDKARRLGYKAKQGYVIYRIRVRRGA
ParentalRKRPVPKGATYGKPVHHGVNQLKFARSLQSVAEERAGRHCGALRVLNSYWVGEDSTYKFFEVILIDPFHK
RKRPVPKGATYGKPVHHGVNQLKFARSLQSVAE.RAGRHCGALRVLNSYWVGEDSTYKFFEVILIDPFHK
RetrocopyRKRPVPKGATYGKPVHHGVNQLKFARSLQSVAEKRAGRHCGALRVLNSYWVGEDSTYKFFEVILIDPFHK
ParentalAIRRNPDTQWITKPVHKHREMRGLTSAGRKSRGLGKGHKFHHTIGGSRRAAWRRRNTLQLHRYR
AIRRNPDT.WITKPVHKHREMRGLTSAGRKSRGLGKGHKFHHTIGGS.RAAWRRRNTLQLHRYR
RetrocopyAIRRNPDTLWITKPVHKHREMRGLTSAGRKSRGLGKGHKFHHTIGGSHRAAWRRRNTLQLHRYR

Legend:
*Stop codon
>Forward frameshift by one nucleotide
<Reverse frameshift by one nucleotide