Parental gene:

RPL28, ENSBTAG00000023343

Aliases:None
Description:60S ribosomal protein L28 [Source:UniProtKB/Swiss-Prot;Acc:Q3T0L7]
Organism:Cow (Bos taurus)
Coordinates:18:62547219..62549950(-)


>ENSBTAG00000023343
ATGTCCGCGCATCTGCAATGGATGGTCGTGCGGAACTGCTCCAGCTTCTTGATCAAGAGGAACAAGCAGACGTACAGCAC
CGAGCCGAATAACCTGAAAGCGCGCAACTCCTTTCGCTACAATGGGCTCATTCACCGCAAGACCGTGGGTGTGGAGCCGG
CGGCGGACGGCAAAGGGGTCGTGGTGGTGATGAAGCGGAGATCCGGCCAGCGCAAGCCAGCCACTTCCTACGTGCGGACC
ACCATCAACAAGAACGCCCGGGCCACCCTCAGCAGCATCCGGCACATGATCCGGAAGAACAAGTACCGCCCGGATTTGCG
CATGGCTGCCATCCGCAGAGCCAGCGCCATCCTGCGCAGCCAGAAGCCTGTGATGGTGAAGAGGAAGCCGAGCCGCCCCA
CCAAGAGCTCCTGA

Library Parental gene expression (RPM)
SRP017611_brain 55 .04 RPM
SRP017611_kidney 98 .51 RPM
SRP017611_liver 110 .70 RPM
ERP005899_muscle 573 .98 RPM
ERP005899_liver 35 .69 RPM
SRP030211_testis 104 .82 RPM



Species Parental gene accession Homology type Retrogenes number
Anolis carolinensis ENSACAG00000015980 ortholog_one2many 1 retrogene
retro_acar_10,
Ailuropoda melanoleuca ENSAMEG00000003764 possible_ortholog 15 retrogenes
retro_amel_1006, retro_amel_1099, retro_amel_1155, retro_amel_1369, retro_amel_1393, retro_amel_1465, retro_amel_1737, retro_amel_231, retro_amel_289, retro_amel_33, retro_amel_474, retro_amel_556, retro_amel_630, retro_amel_822, retro_amel_829,
Callithrix jacchus ENSCJAG00000000869 possible_ortholog 1 retrogene
retro_cjac_218,
Cavia porcellus ENSCPOG00000012833 possible_ortholog 2 retrogenes
retro_cpor_127, retro_cpor_214,
Felis catus ENSFCAG00000005639 possible_ortholog 15 retrogenes
retro_fcat_1045, retro_fcat_1214, retro_fcat_1397, retro_fcat_1404, retro_fcat_1463, retro_fcat_1629, retro_fcat_1663, retro_fcat_171, retro_fcat_233, retro_fcat_484, retro_fcat_575, retro_fcat_786, retro_fcat_904, retro_fcat_910, retro_fcat_942,
Macropus eugenii ENSMEUG00000015744 ortholog_one2one 1 retrogene
retro_meug_1497,
Myotis lucifugus ENSMLUG00000023789 possible_ortholog 1 retrogene
retro_mluc_325,
Macaca mulatta ENSMMUG00000015901 possible_ortholog 1 retrogene
retro_mmul_68,
Monodelphis domestica ENSMODG00000000275 ortholog_one2one 1 retrogene
retro_mdom_1458,
Mus musculus ENSMUSG00000030432 possible_ortholog 10 retrogenes
retro_mmus_162, retro_mmus_1679, retro_mmus_1911, retro_mmus_2511, retro_mmus_2526, retro_mmus_2606, retro_mmus_2629, retro_mmus_3149, retro_mmus_362, retro_mmus_738,
Ochotona princeps ENSOPRG00000000463 ortholog_one2one 1 retrogene
retro_opri_686,
Petromyzon marinus ENSPMAG00000008617 ortholog_one2one 1 retrogene
retro_pmar_10,
Pongo abelii ENSPPYG00000010417 possible_ortholog 4 retrogenes
retro_pabe_1691, retro_pabe_1869, retro_pabe_2383, retro_pabe_2778,
Rattus norvegicus ENSRNOG00000017127 possible_ortholog 5 retrogenes
retro_rnor_1588, retro_rnor_2117, retro_rnor_243, retro_rnor_610, retro_rnor_855,

# RetrogeneDB ID Identity (%) Coverage (%) ORF conservation Expression evidence RDV
1. retro_btau_263 51.96 73.72
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2. retro_btau_433 55.77 72.99
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3. retro_btau_434 51.43 74.45
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4. retro_btau_565 63.06 80.29
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5. retro_btau_891 51.47 97.81
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Download FASTA sequences of all ENSBTAG00000023343 retrocopies