Parental gene:

BT.67498, ENSBTAG00000008306

Aliases:None
Description:E3 ubiquitin-protein ligase makorin-1 [Source:RefSeq peptide;Acc:NP_001098449]
Organism:Cow (Bos taurus)
Coordinates:4:104662858..104680302(-)


>ENSBTAG00000008306
ATGGCGGAGGCTGCAGCTCCCGGAACAACAGCCACACCATCAGGAGCAGGAGCGGCAGCGGCGGCGGCGGCAGCGGCTTC
CCCCACCCCTATCCCCGCAGTCACCTCGCTGTCCCCGGGGGCGGGGGGCGGGGGAGGCGGCAGCGACGGCGGCGGCGGCG
GCGAATCCTCTGTATTTTCTTGTTGGTATTTCATGCATGGGGTTTGTAAGGAAGGAGATAACTGTCGCTACTCACACGAC
CTCTCTGACAGTCCATATGGTGTAGTGTGCAAGTATTTTCAGCGAGGGTACTGTATTTATGGAGACCGCTGCAGATATGA
ACATAGCAAGCCACTGAAACAGGAAGAAGCAACTGCTACAGATCTAACTGCAAAGTCATCCCTTGCTGCTTCCTCAAGTC
TCTCATCAGTTGGACCGACTGTTGATATGAATATGGGCGAAGCTGAGTCAAGAAATTCAAACTTTGCAACTGTAGGAGCC
GGTTCAGAAGACTGGGTGAATGCCATCGAGTTTGTTCCAGGGCAGCCCTACTGTGGCCGGACTGCCCCTTCCTCTGCTGA
AGCCCCCCTGCAGGGCTCAGTGACCAAGGAAGATGCGGAGAAGGAGCAAAGTGCAGTGGAGACCAAGAAGCAGCTCTGCC
CCTATGCTGCAGTGGGGGAGTGCCGCTACGGGGAGAACTGCGCGTACCTGCACGGAGACGCGTGTGACATGTGCGGGCTG
CAGGTCCTCCATCCCGTGGATGCCGCCCAGAGGTCACAGCATATAAAATCCTGCATCGAGGCCCATGAGAAGGACATGGA
GCTCTCGTTCGCGGTGCAGCGCAGCAAGGACATGGTGTGTGGCATCTGCATGGAGGTGGTCTACGAGAAAGCCAACCCCA
GCGAGCGCCGCTTCGGGATCCTCTCCAACTGCAACCACACCTACTGTCTCAAGTGTATTCGCAAGTGGAGGAGTGCTAAG
CAATTTGAGAGCAAGATCATAAAGTCCTGCCCAGAATGCCGGATCACATCTAACTTTGTCATTCCAAGTGAGTACTGGGT
GGAGGAGAAAGAAGAGAAGCAGAAACTCATTCAGAAATACAAGGAGGCAATGAGCAACAAGGCGTGCAGGTATTTTGATG
AAGGCCGTGGGAGCTGCCCATTTGGAGGGAACTGTTTTTACAAGCATGCGTACCCTGATGGCCGTAGAGAGGAGCCACAG
AGACAGAAAGTGGGAACATCAAGCAGATGCCGGGCCCAACGAAGGAACCACTTCTGGGAGCTCATCGAGGAACGAGAGAA
CGGCAACCCTTTTGACGATGAAGAGGAGGTTGTCACCTTTGAGCTGGGCGAGATGTTGCTTATGCTCTTGGCTGCAGGTG
GGGACGACGAGCTGACAGACTCTGAAGATGAGTGGGACTTGTTTCACGATGAGCTGGAAGATTTTTATGACTTGGATCTA
TAG

Library Parental gene expression (RPM)
SRP017611_brain 52 .49 RPM
SRP017611_kidney 40 .48 RPM
SRP017611_liver 46 .44 RPM
ERP005899_muscle 56 .80 RPM
ERP005899_liver 19 .68 RPM
SRP030211_testis 588 .31 RPM



Species Parental gene accession Homology type Retrogenes number
Canis familiaris ENSCAFG00000003953 possible_ortholog 2 retrogenes
retro_cfam_2157, retro_cfam_253,
Choloepus hoffmanni ENSCHOG00000011015 ortholog_one2many 3 retrogenes
retro_chof_173, retro_chof_2357, retro_chof_89,
Callithrix jacchus ENSCJAG00000013474 ortholog_many2many 2 retrogenes
retro_cjac_210, retro_cjac_2991,
Cavia porcellus ENSCPOG00000000948 possible_ortholog 1 retrogene
retro_cpor_109,
Dasypus novemcinctus ENSDNOG00000019564 ortholog_one2many 2 retrogenes
retro_dnov_1011, retro_dnov_388,
Erinaceus europaeus ENSEEUG00000001133 possible_ortholog 1 retrogene
retro_eeur_643,
Felis catus ENSFCAG00000024942 possible_ortholog 1 retrogene
retro_fcat_67,
Homo sapiens ENSG00000133606 ortholog_one2many 4 retrogenes
retro_hsap_1140, retro_hsap_4197, retro_hsap_4676, retro_hsap_4859,
Gorilla gorilla ENSGGOG00000023977 ortholog_many2many 4 retrogenes
retro_ggor_119, retro_ggor_2813, retro_ggor_3031, retro_ggor_381,
Macropus eugenii ENSMEUG00000007399 possible_ortholog 1 retrogene
retro_meug_1659,
Microcebus murinus ENSMICG00000002114 ortholog_one2many 1 retrogene
retro_mmur_1184,
Macaca mulatta ENSMMUG00000010420 ortholog_many2many 3 retrogenes
retro_mmul_191, retro_mmul_2597, retro_mmul_76,
Mus musculus ENSMUSG00000029922 ortholog_one2many 1 retrogene
retro_mmus_2663,
Nomascus leucogenys ENSNLEG00000001921 ortholog_one2many 4 retrogenes
retro_nleu_1027, retro_nleu_2167, retro_nleu_33, retro_nleu_939,
Otolemur garnettii ENSOGAG00000009877 ortholog_one2many 2 retrogenes
retro_ogar_3468, retro_ogar_424,
Ochotona princeps ENSOPRG00000010353 possible_ortholog 1 retrogene
retro_opri_1073,
Procavia capensis ENSPCAG00000014683 possible_ortholog 1 retrogene
retro_pcap_19,
Pongo abelii ENSPPYG00000018057 ortholog_many2many 3 retrogenes
retro_pabe_3435, retro_pabe_3776, retro_pabe_947,
Pan troglodytes ENSPTRG00000019766 ortholog_one2many 5 retrogenes
retro_ptro_2849, retro_ptro_3106, retro_ptro_3234, retro_ptro_75, retro_ptro_776,
Sus scrofa ENSSSCG00000016498 ortholog_one2many 2 retrogenes
retro_sscr_43, retro_sscr_637,
Tupaia belangeri ENSTBEG00000004564 possible_ortholog 2 retrogenes
retro_tbel_1410, retro_tbel_71,
Tarsius syrichta ENSTSYG00000009996 ortholog_one2many 3 retrogenes
retro_tsyr_1256, retro_tsyr_1525, retro_tsyr_508,
Tursiops truncatus ENSTTRG00000009528 ortholog_one2many 2 retrogenes
retro_ttru_1064, retro_ttru_1128,

# RetrogeneDB ID Identity (%) Coverage (%) ORF conservation Expression evidence RDV
1. retro_btau_401 86.58 62.08
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2. retro_btau_943 63.25 58.75
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Download FASTA sequences of all ENSBTAG00000008306 retrocopies