Parental gene:

NSA2, ENSBTAG00000003066

Aliases:NSA2, TINP1
Description:Ribosome biogenesis protein NSA2 homolog [Source:UniProtKB/Swiss-Prot;Acc:Q3SX11]
Organism:Cow (Bos taurus)
Coordinates:20:6661898..6669039(-)


>ENSBTAG00000003066
ATGCCACAAAATGAATATATTGAGTTACACCGTAAGCGCTATGGATATCGTTTGGATTACCATGAGAAAAAGAGAAAGAA
GGAAGGTCGAGAGGCTCATGAACGTTCAAAGAAGGCAAAAAAGATGATTGGTCTGAAAGCGAAGCTCTACCATAAACAGC
GCCATGCTGAGAAAATACAAATGAAAAAGACTATTAAGATGCATGAAAAGAGAAACACCAAACAGAAGAATGATGAAAAA
ACTCCACAAGGAGCAGTACCTGCATATCTACTGGACCGTGAGGGACAGTCTCGAGCTAAAGTACTTTCCAATATGATTAA
ACAGAAACGAAAAGAGAAAGCGGGAAAATGGGAGGTCCCTCTGCCTAAAGTTCGTGCCCAGGGAGAAACAGAAGTATTAA
AAGTTATTCGAACAGGAAAGAGAAAGAAGAAAGCCTGGAAGAGGATGGTTACTAAAGTCTGTTTTGTTGGAGATGGCTTT
ACTCGAAAACCACCTAAATATGAAAGATTCATTAGGCCAATGGGATTACGTTTCAAGAAGGCTCATGTAACACATCCTGA
ACTGAAAGCCACCTTTTGCTTGCCAATACTTGGTGTAAAGAAGAATCCCTCATCCCCACTATATACAACTTTGGGCGTTA
TTACCAAAGGAACCGTCATTGAGGTGAACGTGAGCGAGTTGGGCCTTGTAACACAAGGAGGCAAAGTCATCTGGGGAAAA
TATGCCCAGGTTACCAATAATCCTGAAAATGATGGATGCATAAATGCAGTCTTACTGGTTTGA

Library Parental gene expression (RPM)
SRP017611_brain 2 .56 RPM
SRP017611_kidney 6 .52 RPM
SRP017611_liver 1 .59 RPM
ERP005899_muscle 30 .67 RPM
ERP005899_liver 6 .49 RPM
SRP030211_testis 21 .11 RPM



Species Parental gene accession Homology type Retrogenes number
Canis familiaris ENSCAFG00000008311 possible_ortholog 4 retrogenes
retro_cfam_1292, retro_cfam_361, retro_cfam_49, retro_cfam_64,
Callithrix jacchus ENSCJAG00000016874 possible_ortholog 1 retrogene
retro_cjac_116,
Equus caballus ENSECAG00000005528 ortholog_one2one 1 retrogene
retro_ecab_445,
Echinops telfairi ENSETEG00000004095 possible_ortholog 13 retrogenes
retro_etel_1086, retro_etel_1479, retro_etel_1786, retro_etel_2030, retro_etel_2112, retro_etel_2116, retro_etel_2197, retro_etel_359, retro_etel_613, retro_etel_729, retro_etel_890, retro_etel_940, retro_etel_988,
Felis catus ENSFCAG00000011978 possible_ortholog 1 retrogene
retro_fcat_98,
Loxodonta africana ENSLAFG00000009910 possible_ortholog 4 retrogenes
retro_lafr_253, retro_lafr_455, retro_lafr_620, retro_lafr_714,
Macropus eugenii ENSMEUG00000015798 possible_ortholog 3 retrogenes
retro_meug_1191, retro_meug_1408, retro_meug_161,
Myotis lucifugus ENSMLUG00000014464 ortholog_one2one 4 retrogenes
retro_mluc_1596, retro_mluc_1664, retro_mluc_757, retro_mluc_917,
Monodelphis domestica ENSMODG00000001900 possible_ortholog 4 retrogenes
retro_mdom_115, retro_mdom_1702, retro_mdom_581, retro_mdom_592,
Mus musculus ENSMUSG00000060739 ortholog_one2one 25 retrogenes
retro_mmus_1121, retro_mmus_1329, retro_mmus_1472, retro_mmus_1558, retro_mmus_1587, retro_mmus_1751, retro_mmus_1785, retro_mmus_1819, retro_mmus_1890, retro_mmus_2426, retro_mmus_2617, retro_mmus_2706, retro_mmus_2806, retro_mmus_3105, retro_mmus_3246, retro_mmus_3302, retro_mmus_3340, retro_mmus_3485, retro_mmus_3671, retro_mmus_3713, retro_mmus_402, retro_mmus_518, retro_mmus_674, retro_mmus_690, retro_mmus_890,
Oryctolagus cuniculus ENSOCUG00000006536 possible_ortholog 6 retrogenes
retro_ocun_149, retro_ocun_1591, retro_ocun_1602, retro_ocun_306, retro_ocun_658, retro_ocun_76,
Pteropus vampyrus ENSPVAG00000005396 ortholog_one2one 2 retrogenes
retro_pvam_1352, retro_pvam_476,
Rattus norvegicus ENSRNOG00000016530 ortholog_one2one 15 retrogenes
retro_rnor_1074, retro_rnor_1317, retro_rnor_1366, retro_rnor_1921, retro_rnor_2630, retro_rnor_2745, retro_rnor_2767, retro_rnor_2817, retro_rnor_2820, retro_rnor_2852, retro_rnor_2877, retro_rnor_2964, retro_rnor_618, retro_rnor_945, retro_rnor_951,
Sorex araneus ENSSARG00000009424 possible_ortholog 4 retrogenes
retro_sara_555, retro_sara_589, retro_sara_620, retro_sara_703,
Sus scrofa ENSSSCG00000014075 ortholog_one2one 2 retrogenes
retro_sscr_287, retro_sscr_288,
Tupaia belangeri ENSTBEG00000012978 possible_ortholog 56 retrogenes
retro_tbel_1062, retro_tbel_1078, retro_tbel_1141, retro_tbel_1317, retro_tbel_1329, retro_tbel_1476, retro_tbel_152, retro_tbel_1548, retro_tbel_1569, retro_tbel_1627, retro_tbel_1733, retro_tbel_1762, retro_tbel_1778, retro_tbel_179, retro_tbel_1845, retro_tbel_1940, retro_tbel_2102, retro_tbel_2113, retro_tbel_2138, retro_tbel_2220, retro_tbel_229, retro_tbel_254, retro_tbel_2586, retro_tbel_2757, retro_tbel_2784, retro_tbel_3016, retro_tbel_3040, retro_tbel_3116, retro_tbel_3264, retro_tbel_3298, retro_tbel_3417, retro_tbel_3514, retro_tbel_3601, retro_tbel_3650, retro_tbel_3724, retro_tbel_3736, retro_tbel_3763, retro_tbel_3795, retro_tbel_4028, retro_tbel_406, retro_tbel_4104, retro_tbel_4169, retro_tbel_4270, retro_tbel_430, retro_tbel_4401, retro_tbel_4422, retro_tbel_4491, retro_tbel_4503, retro_tbel_4513, retro_tbel_4642, retro_tbel_4689, retro_tbel_535, retro_tbel_670, retro_tbel_721, retro_tbel_897, retro_tbel_91,

# RetrogeneDB ID Identity (%) Coverage (%) ORF conservation Expression evidence RDV
1. retro_btau_326 69.14 60.38
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2. retro_btau_931 100.00 100.00
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3. retro_btau_949 96.15 100.00
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Download FASTA sequences of all ENSBTAG00000003066 retrocopies