RetrogeneDB ID:

retro_mluc_1664

Retrocopy
location
Organism:Microbat (Myotis lucifugus)
Coordinates:GL429881:2929301..2930074(+)
Located in intron of:None
Retrocopy
information
Ensembl ID:None
Aliases:None
Status:NOVEL
Parental gene
information
Parental gene summary:
Parental gene symbol:NSA2
Ensembl ID:ENSMLUG00000014464
Aliases:None
Description:None


Retrocopy-Parental alignment summary:






>retro_mluc_1664
ATGCCACAAAATAAGAATACTGAGTTACACCATAAACGCTATGGATATTGTTTGGATTACCATGAGAAGAGAAAGAAGGA
AGATCAAGAGGCTCATGAATGTTCAAAGGCAAAAAAAGATGACTGGTCTGAAGGCTAAGCTCTACTGTAAACAGCGCCAT
GCTGAGAAAATACAAATGGAAAAGACTATCAAGAGGCATAAAAAGAGAAACACCAAACAAAAGAATGATGAAAAGACTCC
ACAAGGAGCAGTACCTGCCTATCTACTGGACAGAGAGGGGCAGTCCCAAGCTAAAGTACTTTCCAATATGATTAAACAAA
AACAAAGAGAGGAAGCTGGAAAATGGGAAGTCCCTCTGCCCAAAGTTCATGCTCAGGGAGAAACAGAGGTATTAAAAGTT
ATTTGAACAAGAAAGAGAAAGAAAAAGGTGTGGAGGAGGATGGTTACTAAAGTGCTTTGTTGGAGATGGCTTTACTCAAA
AACCACCTAAATATGGAAGATTCATTAGGCCAATGGGCTTACGTTTCAAGAAGGCCCATGTAACACATCCTGAACTGAAA
GCCACCTTTTGCCTGCCAATACTTGGTGTAAAGAAGAATCCATCATCCCCACTTTATACAACTTTGGGTGTTATTACCAA
AGGTACTATCAACGAGGTATAGATGAGCAAGTTAGGCCTTGTAATAACAAGAGACAAGATTATTGGAGAAAAATATGCCC
AGGTTACCAACAATCCTGAAAATGCTGGATGCATAAATGCAGTCTTACTGCTT

ORF - retro_mluc_1664 Open Reading Frame is not conserved.
Retrocopy - Parental Gene Alignment summary:
Percent Identity: 80.53 %
Parental protein coverage: 100. %
Number of stop codons detected: 2
Number of frameshifts detected 2


Retrocopy - Parental Gene Alignment:

ParentalMPQNEYIELHRKRYGYRLDYHEKKRKKEGREAHERSKKAKK-MIGLKAKLYHKQRHAEKIQMKKTIKMHE
MPQN...ELH.KRYGY.LDYHEK.RKKE..EAHE.S.KAKK.M.GLKAKLY.KQRHAEKIQM.KTIK.H.
RetrocopyMPQNKNTELHHKRYGYCLDYHEK-RKKEDQEAHECS-KAKK>MTGLKAKLYCKQRHAEKIQMEKTIKRHK
ParentalKRNTKQKNDEKTPQGAVPAYLLDREGQSRAKVLSNMIKQKRKEKAGKWEVPLPKVRAQGETEVLKVIRTG
KRNTKQKNDEKTPQGAVPAYLLDREGQS.AKVLSNMIKQK..E.AGKWEVPLPKV.AQGETEVLKVI.T.
RetrocopyKRNTKQKNDEKTPQGAVPAYLLDREGQSQAKVLSNMIKQKQREEAGKWEVPLPKVHAQGETEVLKVI*T-
ParentalKRKKKAWKRMVTKV-CFVGDGFTRKPPKYERFIRPMGLRFKKAHVTHPELKATFCLPILGVKKNPSSPLY
...KK...R......CFVGDGFT.KPPKY.RFIRPMGLRFKKAHVTHPELKATFCLPILGVKKNPSSPLY
RetrocopyRKRKKKVWRRMVTK>CFVGDGFTQKPPKYGRFIRPMGLRFKKAHVTHPELKATFCLPILGVKKNPSSPLY
ParentalTTLGVITKGTVIEVNVSELGLVTQGGKVIWGKYAQVTNNPENDGCINAVLLV
TTLGVITKGT..EV..S.LGLV....K.I..KYAQVTNNPEN.GCINAVLL.
RetrocopyTTLGVITKGTINEV*MSKLGLVITRDKIIGEKYAQVTNNPENAGCINAVLLL

Legend:
*Stop codon
>Forward frameshift by one nucleotide
<Reverse frameshift by one nucleotide






RNA-Seq - click to see more details

Myotis lucifugus was not studied using RNA-Seq expression data.

ChIP-Seq - click to see more details

Myotis lucifugus was not studied using ChIP-Seq data.

EST - click to see more details

Myotis lucifugus was not studied using EST data.

TSS - click to see more details

Myotis lucifugus was not studied using FANTOM5 data.

Lab - click to see more details

retro_mluc_1664 was not experimentally validated.

Retrocopy orthology:
Myotis lucifugus does not belong to any of the species groups (eutheria, teleost or neognath), studied for retrocopy-based homology. For more information about studied groups, please go to help section.
Parental genes homology:
Parental genes homology involve 17 parental genes, and 148 retrocopies.

Species Parental gene accession Retrocopies number
Bos taurus ENSBTAG000000030663 retrocopies
retro_btau_326, retro_btau_931, retro_btau_949,
Canis familiaris ENSCAFG000000083114 retrocopies
retro_cfam_1292, retro_cfam_361, retro_cfam_49, retro_cfam_64,
Callithrix jacchus ENSCJAG000000168741 retrocopy
retro_cjac_116,
Equus caballus ENSECAG000000055281 retrocopy
retro_ecab_445,
Echinops telfairi ENSETEG0000000409513 retrocopies
retro_etel_1086, retro_etel_1479, retro_etel_1786, retro_etel_2030, retro_etel_2112, retro_etel_2116, retro_etel_2197, retro_etel_359, retro_etel_613, retro_etel_729, retro_etel_890, retro_etel_940, retro_etel_988,
Felis catus ENSFCAG000000119781 retrocopy
retro_fcat_98,
Loxodonta africana ENSLAFG000000099104 retrocopies
retro_lafr_253, retro_lafr_455, retro_lafr_620, retro_lafr_714,
Macropus eugenii ENSMEUG000000157983 retrocopies
retro_meug_1191, retro_meug_1408, retro_meug_161,
Myotis lucifugus ENSMLUG00000014464 4 retrocopies
retro_mluc_1596, retro_mluc_1664 , retro_mluc_757, retro_mluc_917,
Monodelphis domestica ENSMODG000000019004 retrocopies
retro_mdom_115, retro_mdom_1702, retro_mdom_581, retro_mdom_592,
Mus musculus ENSMUSG0000006073925 retrocopies
retro_mmus_1121, retro_mmus_1329, retro_mmus_1472, retro_mmus_1558, retro_mmus_1587, retro_mmus_1751, retro_mmus_1785, retro_mmus_1819, retro_mmus_1890, retro_mmus_2426, retro_mmus_2617, retro_mmus_2706, retro_mmus_2806, retro_mmus_3105, retro_mmus_3246, retro_mmus_3302, retro_mmus_3340, retro_mmus_3485, retro_mmus_3671, retro_mmus_3713, retro_mmus_402, retro_mmus_518, retro_mmus_674, retro_mmus_690, retro_mmus_890,
Oryctolagus cuniculus ENSOCUG000000065366 retrocopies
retro_ocun_149, retro_ocun_1591, retro_ocun_1602, retro_ocun_306, retro_ocun_658, retro_ocun_76,
Pteropus vampyrus ENSPVAG000000053962 retrocopies
retro_pvam_1352, retro_pvam_476,
Rattus norvegicus ENSRNOG0000001653015 retrocopies
retro_rnor_1074, retro_rnor_1317, retro_rnor_1366, retro_rnor_1921, retro_rnor_2630, retro_rnor_2745, retro_rnor_2767, retro_rnor_2817, retro_rnor_2820, retro_rnor_2852, retro_rnor_2877, retro_rnor_2964, retro_rnor_618, retro_rnor_945, retro_rnor_951,
Sorex araneus ENSSARG000000094244 retrocopies
retro_sara_555, retro_sara_589, retro_sara_620, retro_sara_703,
Sus scrofa ENSSSCG000000140752 retrocopies
retro_sscr_287, retro_sscr_288,
Tupaia belangeri ENSTBEG0000001297856 retrocopies
retro_tbel_1062, retro_tbel_1078, retro_tbel_1141, retro_tbel_1317, retro_tbel_1329, retro_tbel_1476, retro_tbel_152, retro_tbel_1548, retro_tbel_1569, retro_tbel_1627, retro_tbel_1733, retro_tbel_1762, retro_tbel_1778, retro_tbel_179, retro_tbel_1845, retro_tbel_1940, retro_tbel_2102, retro_tbel_2113, retro_tbel_2138, retro_tbel_2220, retro_tbel_229, retro_tbel_254, retro_tbel_2586, retro_tbel_2757, retro_tbel_2784, retro_tbel_3016, retro_tbel_3040, retro_tbel_3116, retro_tbel_3264, retro_tbel_3298, retro_tbel_3417, retro_tbel_3514, retro_tbel_3601, retro_tbel_3650, retro_tbel_3724, retro_tbel_3736, retro_tbel_3763, retro_tbel_3795, retro_tbel_4028, retro_tbel_406, retro_tbel_4104, retro_tbel_4169, retro_tbel_4270, retro_tbel_430, retro_tbel_4401, retro_tbel_4422, retro_tbel_4491, retro_tbel_4503, retro_tbel_4513, retro_tbel_4642, retro_tbel_4689, retro_tbel_535, retro_tbel_670, retro_tbel_721, retro_tbel_897, retro_tbel_91,




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