RetrogeneDB ID:

retro_tsyr_125

Retrocopy
location
Organism:Tarsier (Tarsius syrichta)
Coordinates:GeneScaffold_3438:273137..274209(-)
Located in intron of:ENSTSYG00000002291
Retrocopy
information
Ensembl ID:None
Aliases:None
Status:NOVEL
Parental gene
information
Parental gene summary:
Parental gene symbol:ADIPOR1
Ensembl ID:ENSTSYG00000001491
Aliases:None
Description:adiponectin receptor 1 [Source:HGNC Symbol;Acc:24040]


Retrocopy-Parental alignment summary:






>retro_tsyr_125
CCAGTAACAGAGAAACTGACACGGTGGAACTGGCTGAACTGGGTGGGACCCCTGCTGGAAGAGAAGGGCAAACGGGTCAT
CGCCAACCCAACCAAAGCTGAAGAGCAAATATGCCCAGTGCCCCAGGAAGAAGAGGAGGTGCGTGTCCTGACGCTTCCCC
TGAAAGCCCACCATGCCGTGGAGAAGATGGAGGAGTTTGTGTACAAGGTCTGGGAAGGACACTGGATGGTCATCCCATAT
AATGTTCTCCCTGACTGGCTGAAGGACAATGACTATCTGCTACATGGCCACAGACTGCGCATGCCCTCCTTTAGGGCTTT
CTTCAAGAGTATCTTCCACATCCATATAGAAACTGGCAACATTTGGACCCATCTGCTTGGTTTTGTGCTGTTTCTCTTTT
TGGGAATCTTGACCATGCTCAGACCAAATATGTACTTCATGGCCCTTCTCCAGGGGAAGGTGGTTTTGGGGATGTTCTTT
TTGGGTGCAGTGCTCTGCCTCAGCTTCTCCTGGCTCTTCCACACCATCTATTGTCACTCACAGAAAAGTCCCCTGGACTT
TTTCCAAACTAGACTATTAAGGAATTGCTCTACTGATTATGGGGAGCTTTGTCCCCTGGCTTTATTACACCTTCTATTGC
TTCCCACAGCCACGGCTCATTTCCTCTCCATCAGCTGTATCCTGGGCATTTCAGCTATCATTGTGGCACAGTGGGACCAG
TTTGCCACTCCTAAGCACCGACAGACAAGAGCAGGAATGTTCCTGGGACTTGGCTTGAGTGGTGTTGTGCCCACCATGTA
CTTTACAATAGCTGAGGGCTTTGTCAAGGCTGCTACAGTGGGCCAGATGGGCAGGTTCTTCCTCATGGCTATGATGCACA
TTACCAGAGCTGGCCCTTACGTTGCTCGAATTCCTGAGTGCTTCTTTCCAGGGAAATTTGACATACGGTTCCAGTCTCAT
CAGATTTTTCATGTCCTGGTGGTGGCAGCAGCCTTTGTCCAGTTCTATGGGGTCTCCAACCTTCAGGAATTCCGATATAG
TCTAAAGTGGCTGTACTGATGACTCCCTTCTC

ORF - retro_tsyr_125 Open Reading Frame is not conserved.
Retrocopy - Parental Gene Alignment summary:
Percent Identity: 80.82 %
Parental protein coverage: 95.98 %
Number of stop codons detected: 1
Number of frameshifts detected: 3


Retrocopy - Parental Gene Alignment:

ParentalPASNRETDTVELAELGPLLEEKGKRVIANPTKAEEEQTCPVPQEEEEEVRVLTLPLQAHHAMEKMEEFVY
P.....T....L...GPLLEEKGKRVIANPTKAEE.Q.CPVPQEEEE.VRVLTLPL.AHHA.EKMEEFVY
RetrocopyPVTEKLTRWNWLNWVGPLLEEKGKRVIANPTKAEE-QICPVPQEEEE-VRVLTLPLKAHHAVEKMEEFVY
ParentalKVWEGRWRVIPYDVLPDWLKDNDYLLHGHRPPMPSFRACFKSIFRIHTETGNIWTHLLGFVLFLFLGILT
KVWEG.W.VIPY.VLPDWLKDNDYLLHGHR..MPSFRA.FKSIF.IH.ETGNIWTHLLGFVLFLFLGILT
RetrocopyKVWEGHWMVIPYNVLPDWLKDNDYLLHGHRLRMPSFRAFFKSIFHIHIETGNIWTHLLGFVLFLFLGILT
ParentalMLRPNMYFMAPLQEKVVFGMFFLGAVLCLSFSWLFHTVYCHSE-KVSRTFSKLDYSGIALLIMGSFVPWL
MLRPNMYFMA.LQ.KVV.GMFFLGAVLCLSFSWLFHT.YCHS..KV..TFSKLDY.GIALLIMGSFVPWL
RetrocopyMLRPNMYFMALLQGKVVLGMFFLGAVLCLSFSWLFHTIYCHSQ>KVPWTFSKLDY*GIALLIMGSFVPWL
ParentalYYSFYCSPQPRLI-YLSIVCILGISAIIVAQWDRFATPKHRQTRAALFSNVVEFLSGIVPTMQFTIAAGF
YY.FYC.PQPRLI..LSI.CILGISAIIVAQWD.FATPKHRQTRA..F......LSG.VPTM.FTIA.GF
RetrocopyYYTFYCFPQPRLI<FLSISCILGISAIIVAQWDQFATPKHRQTRAGMFLGL--GLSGVVPTMYFTIAEGF
ParentalVKTATVGQMSCFCLMAVMYITGAGLYDA-IPELFFPGKFDIWFQSHQIFH--VVAAAFVHFYGVSNLQEF
VK.ATVGQM..F.LMA.M.IT.AG.Y.A.IPE.FFPGKFDI.FQSHQIFH..VVAAAFV.FYGVSNLQEF
RetrocopyVKAATVGQMGRFFLMAMMHITRAGPYVARIPECFFPGKFDIRFQSHQIFHVLVVAAAFVQFYGVSNLQEF
Parental-YGLK-GCCTDDSLL
.Y.LK.GC.TDDSLL
RetrocopyRYSLK>GC-TDDSLL

Legend:
*Stop codon
>Forward frameshift by one nucleotide
<Reverse frameshift by one nucleotide






RNA-Seq - click to see more details

Tarsius syrichta was not studied using RNA-Seq expression data.

ChIP-Seq - click to see more details

Tarsius syrichta was not studied using ChIP-Seq data.

EST - click to see more details

Tarsius syrichta was not studied using EST data.

TSS - click to see more details

Tarsius syrichta was not studied using FANTOM5 data.

Lab - click to see more details

retro_tsyr_125 was not experimentally validated.

Retrocopy orthology:
Tarsius syrichta does not belong to any of the species groups (eutheria, teleost or neognath), studied for retrocopy-based homology. For more information about studied groups, please go to help section.
Parental genes homology:
Parental genes homology involve 19 parental genes, and 37 retrocopies.

Species Parental gene accession Retrocopies number
Ailuropoda melanoleuca ENSAMEG000000121991 retrocopy
retro_amel_1853,
Choloepus hoffmanni ENSCHOG000000064508 retrocopies
retro_chof_1127, retro_chof_1222, retro_chof_1917, retro_chof_2218, retro_chof_2380, retro_chof_471, retro_chof_749, retro_chof_995,
Callithrix jacchus ENSCJAG000000062683 retrocopies
retro_cjac_2262, retro_cjac_740, retro_cjac_741,
Cavia porcellus ENSCPOG000000004821 retrocopy
retro_cpor_470,
Dipodomys ordii ENSDORG000000068761 retrocopy
retro_dord_19,
Felis catus ENSFCAG000000135651 retrocopy
retro_fcat_1514,
Loxodonta africana ENSLAFG000000035201 retrocopy
retro_lafr_277,
Macropus eugenii ENSMEUG000000154391 retrocopy
retro_meug_516,
Microcebus murinus ENSMICG000000079423 retrocopies
retro_mmur_1199, retro_mmur_184, retro_mmur_764,
Myotis lucifugus ENSMLUG000000161022 retrocopies
retro_mluc_1275, retro_mluc_200,
Macaca mulatta ENSMMUG000000070461 retrocopy
retro_mmul_1322,
Mustela putorius furoENSMPUG000000112151 retrocopy
retro_mputfur_550,
Ochotona princeps ENSOPRG000000045283 retrocopies
retro_opri_101, retro_opri_1050, retro_opri_392,
Pongo abelii ENSPPYG000000003421 retrocopy
retro_pabe_1072,
Sorex araneus ENSSARG000000076801 retrocopy
retro_sara_25,
Ictidomys tridecemlineatus ENSSTOG000000154593 retrocopies
retro_itri_215, retro_itri_257, retro_itri_512,
Tupaia belangeri ENSTBEG000000151492 retrocopies
retro_tbel_1501, retro_tbel_1804,
Tarsius syrichta ENSTSYG00000001491 1 retrocopy
retro_tsyr_125 ,
Tursiops truncatus ENSTTRG000000063812 retrocopies
retro_ttru_1055, retro_ttru_863,


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