RetrogeneDB ID: retro_ogar_326

Retrocopy location

• Organism: Bushbaby (Otolemur garnettii)
• Coordinates: GL873520.1:24990390..24991740(+)
• Located in intron of: None

Retrocopy information

• Ensembl ID: None
• Aliases: None
• Status: NOVEL

Parental gene information

• Parental gene symbol: BRD7
• Ensembl ID: ENSOGAG00000011289
• Aliases: None
• Description: bromodomain containing 7 [Source:HGNC Symbol;Acc:14310]

Sequence

>retro_ogar_326
AAACTAATGTGTACTAATGCCATGATTTACAACAAACCAGAGACCATTTATTATAAAGCTGCCAAGAAACTCTTGCACTC
AGGGATGAAAATTCTTAGCCAGGAAGGAATTCAAAGCCTGAAACAGAGCATAGACTTCATGGCAGATTTGCAAAAAACTC
GAAAGCAGAAAGATCGATCAGATACCTCACAGAGCAGGGAGGATGGCGGCTGCTGGCTGAGAGAGAGGGAAGACTCTGGA
GATGCCGAAGCACAAGCTTTCAAAAGTCCCTATAAGGAAAATAAAAGGAAAGACAAAGATATGCTTGAAGATAAGTTTAG
AAGGAGTCATTTAGAATGGGAGCAGGGGCAGATTGACCGCGTGGTGAGGGAGTCTGGAGGGAAGCTGACCCGGCGGCTCG
TCAACAGCCAGTGTGAATTTGAGAGAAGGAAACCAGATGGAACAACAACGCTGGGACTTCTCCACCCCGTGGATCCCATG
GTGGGAGAACCAGGATACTTCCCTGTGAGACTGGGAACGACAACAGGAAGACTCCAGTCTGGTGTGAACACTTTGCAGGG
CTTCAGAGAGGACAAAAGGAACAAAGTAACTCCGGTGTTATACTTGAATTATGGACCCTACAGTTTGTATGCACCACATT
ATGACTCTACATTTGCAAATATCAACAAGGATGATTCTGATTTAATCTATTCAACTTATGGGGAAGACTCTGATCTTCAA
AGTGATTTCAGCATCCATGAGTTTTTGACCACATGCCAAGATTATCAGTATGTCATGGTAGATAGTTTGCTGGATGTCTT
AACAAAAGGAGGGCATTCTAGAACACTGCGGGAGTCGTAGAAGAGTTGTTTTCCTGAAGAAGAAGGTCATGTGAGGACAC
TTAACACAGCAAAGGAAATGGAGATTACAGAAATAGAGTCAGCAGGACGTCTGGACTCCAGTACTCAGGACAGGCTCATG
GCACTCAAAGCAGTGACAAGCGTTGGCGCTCCAGTTGAAGTCTTTGAAGAAGCTGAATTGTTCCAGAAGAAACTTGATGA
GACCACCAAATTGCTCAGGGAGCTCTAGGAAGCCCAGAATGAGCGTTTGAGCACCAGACCCCCTCCCAATATGATATGTC
TCTTGGGTCCTTCATGTAAAGAAATGCATCTTGCTGAACAAGTGACCAATAATCTTAAAGAACTTGCACAGCAAGTAACT
CCAGGTGACATTGTAAGCATGTATGGAGTTTGGAAAGCAATGGGGATTTCCATTCCTTCCCCGGTGGTAGAAAACAACTT
TGTAGATTTAGCAGAAGATTTTGAAGAACCTAAAAAGGCTGATATTGCTGAGGGTGGCCCTGATGGGATC

Alignment

ORF - retro_ogar_326 Open Reading Frame is not conserved.

Retrocopy - Parental Gene Alignment summary:

• Percent Identity: 92.26 %
• Parental protein coverage: 69.33 %
• Number of stop codons detected: 2
• Number of frameshifts detected: 0

Retrocopy - Parental Gene Alignment:

Parental  KLMCTNAMIYNKPETIYYKAAKKLLHSGMKILSQERIQSLKQSIDFMADLQKTRKQKDRSDTSQSGEDGG
          KLMCTNAMIYNKPETIYYKAAKKLLHSGMKILSQE.IQSLKQSIDFMADLQKTRKQKDRSDTSQS.EDGG
Retrocopy KLMCTNAMIYNKPETIYYKAAKKLLHSGMKILSQEGIQSLKQSIDFMADLQKTRKQKDRSDTSQSREDGG

Parental  CWPREREDSGDAEAQAFKSPNKENKRRDKDTLEDKFRSGHLEREQEQIDRVVRESGGKLTRRLANSQCEF
          CW.REREDSGDAEAQAFKSP.KENKR.DKD.LEDKFR..HLE.EQ.QIDRVVRESGGKLTRRL.NSQCEF
Retrocopy CWLREREDSGDAEAQAFKSPYKENKRKDKDMLEDKFRRSHLEWEQGQIDRVVRESGGKLTRRLVNSQCEF

Parental  ERRKPDGTTTLGLLHPVDPTVGEPGYCPVRLGMTTGRLQSGVNTLQGFKEDKRNKVTPVLYLNYGPYSSY
          ERRKPDGTTTLGLLHPVDP.VGEPGY.PVRLG.TTGRLQSGVNTLQGF.EDKRNKVTPVLYLNYGPYS.Y
Retrocopy ERRKPDGTTTLGLLHPVDPMVGEPGYFPVRLGTTTGRLQSGVNTLQGFREDKRNKVTPVLYLNYGPYSLY

Parental  APHYDSTFANISKDDSDLIYSTYGEDSDLQSDFSIHEFLATCQDYQYVMADSLLDVLTKGGHSRTLRESE
          APHYDSTFANI.KDDSDLIYSTYGEDSDLQSDFSIHEFL.TCQDYQYVM.DSLLDVLTKGGHSRTLRES.
Retrocopy APHYDSTFANINKDDSDLIYSTYGEDSDLQSDFSIHEFLTTCQDYQYVMVDSLLDVLTKGGHSRTLRES*

Parental  TSCFPEEEGHARTLNTAKEMEITEIESAGRLDSSTQDRLTALKAVTSFGAPVEVFDSEEAEVFQKKLDET
          .SCFPEEEGH.RTLNTAKEMEITEIESAGRLDSSTQDRL.ALKAVTS.GAPVEVF..EEAE.FQKKLDET
Retrocopy KSCFPEEEGHVRTLNTAKEMEITEIESAGRLDSSTQDRLMALKAVTSVGAPVEVF--EEAELFQKKLDET

Parental  TKLLRELQEAQNERLSTRPPPNMICLLGPSYKEMHLAEQVTNNLKELAQQVTPGDVVSTYGVRKAMGISI
          TKLLREL.EAQNERLSTRPPPNMICLLGPS.KEMHLAEQVTNNLKELAQQVTPGD.VS.YGV.KAMGISI
Retrocopy TKLLREL*EAQNERLSTRPPPNMICLLGPSCKEMHLAEQVTNNLKELAQQVTPGDIVSMYGVWKAMGISI

Parental  PSPVVENNFVDLTEDSEEPKKADVAEGGPDGI
          PSPVVENNFVDL.ED.EEPKKAD.AEGGPDGI
Retrocopy PSPVVENNFVDLAEDFEEPKKADIAEGGPDGI

Legend:

• *: Stop codon
• >: Forward frameshift by one nucleotide
• <: Reverse frameshift by one nucleotide

Expression

RNA-Seq

Otolemur garnettii was not studied using RNA-Seq expression data.

ChIP-Seq

Otolemur garnettii was not studied using ChIP-Seq data.

EST

Otolemur garnettii was not studied using EST data.

TSS

Otolemur garnettii was not studied using FANTOM5 data.

Lab

retro_ogar_326 was not experimentally validated.

Homology

Retrocopy orthology:

Otolemur garnettii does not belong to any of the species groups (eutheria, teleost or neognath), studied for retrocopy-based homology. For more information about studied groups, please go to help section.

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Parental genes homology:

Parental genes homology involve 7 parental genes, and 12 retrocopies.

Species	Parental gene accession	Retrocopies number
Choloepus hoffmanni	ENSCHOG00000009355	1 retrocopy	retro_chof_2431,
Callithrix jacchus	ENSCJAG00000001832	1 retrocopy	retro_cjac_2372,
Homo sapiens	ENSG00000166164	2 retrocopies	retro_hsap_2723, retro_hsap_3507,
Gorilla gorilla	ENSGGOG00000014824	2 retrocopies	retro_ggor_1895, retro_ggor_2372,
Monodelphis domestica	ENSMODG00000013057	1 retrocopy	retro_mdom_152,
Otolemur garnettii	ENSOGAG00000011289	2 retrocopies	retro_ogar_326 , retro_ogar_438,
Pan troglodytes	ENSPTRG00000008103	3 retrocopies	retro_ptro_1840, retro_ptro_2379, retro_ptro_2384,