Parental gene:

BRD7, ENSCJAG00000001832

Aliases:None
Description:None
Organism:Marmoset (Callithrix jacchus)
Coordinates:20:4007414..4048470(-)


>ENSCJAG00000001832
ATGGGCAAGAAGCACAAGAAGCACAAGTCGGACAAACATCTCTACGAGGAAGAGTATGTAGAGAAGCCTTTGAAGCTCGT
CCTCAAAGTAGGAGGAAACGAAGTCACCGAACTCTCCACGGGAAGCTCGGGACACGACTCCAGCCTCTTCGAAGACAAAA
ACGATCATGACAAACACAAGGACAGAAAGCGGAAAAAGAGAAAGAAAGGAGAGAAGCAGGTTCCAGGGGAAGAAAAGGGG
AGAAAACGGAGAAGAGTTAAGGAGGATAAAAAGAAGCGAGATCGAGACCGTGTGGAGAATGACACAGAAAAAGACCTCCA
GTGTCATGCCCCTGTGAGATTAGACTTGCCCCCTGAGAAGCCTCTCACAAGCTCTTTAGCCAAACAAGAAGAAGTAGAAC
AGACACCTCTTCAAGAAGCTTTGAATCAACTGATGAGACAATTGCAGAGAAAAGATCCAAGTGCTTTCTTTTCATTTCCT
GTGACTGATTTTATTGCTCCTGGCTACTCCATGATCATTAAACACCCAATGGATTTTAGTACCATGAAAGAAAAGATCAA
GAACAATGACTACCAGTCCATAGAAGAACTAAAGGATAACTTCAAACTAATGTGTACTAATGCCATGATTTACAACAAAC
CAGAGACCATTTATTATAAAGCTGCAAAGAAGCTGTTGCACTCAGGGATGAAAATTCTTAGCCAGGAAAGAATTCAGAGC
CTGAAGCAGAGCATAGATTTCATGGCTGACTTGCAGAAAACTCGAAAGCAGAAAGACAGGACAGACACCTCGCAAAGTGG
AGAGGATGGAGGCTGCTGGCCAAGAGAGAGAGAGGACTCTGGAGATGCCGAAGCACAAGCCTTCAAGAGTCCCAGCAAAG
AAAATAAAAAGAAAGACAAAGATATGCTTGAAGATAAGTTTAGAAGCAATAATTTAGAGAGAGAACAGGAGCAGCTTGAT
CGCATCGTGAGGGAATCTGGAGGAAAGCTGACCAGGAGGCTTGTGAACAGTCAGTGTGAATTTGAAAGAAGAAAACCAGA
TGGAACGACAACGCTGGGACTTCTCCATCCTGTGGATCCCATTGTAGGAGAGCCAGGCTACTGCCCTGTGAGACTGGGAA
TGACAACTGGAAGACTTCAGTCTGGAGTGAATACTTTGCAGGGGTTCAAAGAGGATAAAAGAAACAAAGTCACTCCAGCA
GTGTTATATTTGAATTATGGGCCCTACAGTTCTTATGCACCGCATTATGACTCCACATTCGCAAATATCAGCAAGGATGA
TTCTGATTTAATCTATTCAACCTATGGGGAAGACTCTGATCTTCCAAGTGATTTCAGCATCCATGAGTTTTTGGCCACAT
GCCAAGATTATCCATATGTCATGGCAGATAGTTTACTGGATGTTTTGACAAAAGGAGGGCATTCCAGGACTCTACAAGAG
TTGGAGATGTCATCGCCTGAAGATGAAGGCCATACTAGGACACTTGACACAGCAAAAGAAATGGAGATTACAGAAATAGA
GCCAGTAGGGTGTTTGGACTCCAGTACTCAAGACAGGCTCATAGCACTGAAAGCAGTGACAAACTTTGGCATTCCAGTTG
AAGTTTTTGACTCTGAAGAAGCTGAAGTATTCCAGAAGAAACTTGATGAGACCACCAGATTGCTCAGGGAGCTCCAGGAA
GCCCAGAATGAACGTTTGAGCACCAGACCTCCTCCCAACATGATCTGTCTCTTGGGTCCTTCATACAGAGAAATGCATCT
TGCTGAACAAGTGACCAATAATCTTAAAGAACTTGCACAGCAAGTAACTCCAGGTGATATCGTAAGCACGTATGGAGTTC
GGAAAGCAATGGGGATTTCCATTCCTTCACCCATCGTGGAAAACAACTTCGTGGATTTGACAGAAGATATTGAAGAACCT
AAAAAGATGGATGTTGCTGAGTGTGGACCTGATGGGAGTTGA

Library Parental gene expression (RPM)
SRP051959_colon 33 .10 RPM
SRP051959_heart 27 .33 RPM
SRP051959_kidney 37 .10 RPM
SRP051959_liver 21 .83 RPM
SRP051959_lung 48 .51 RPM
SRP051959_lymph_node 57 .94 RPM
SRP051959_skeletal_muscle 23 .56 RPM
SRP051959_spleen 46 .85 RPM



Species Parental gene accession Homology type Retrogenes number
Choloepus hoffmanni ENSCHOG00000009355 ortholog_one2one 1 retrogene
retro_chof_2431,
Homo sapiens ENSG00000166164 ortholog_one2one 2 retrogenes
retro_hsap_2723, retro_hsap_3507,
Gorilla gorilla ENSGGOG00000014824 ortholog_one2one 2 retrogenes
retro_ggor_1895, retro_ggor_2372,
Monodelphis domestica ENSMODG00000013057 ortholog_one2many 1 retrogene
retro_mdom_152,
Otolemur garnettii ENSOGAG00000011289 ortholog_one2one 2 retrogenes
retro_ogar_326, retro_ogar_438,
Pan troglodytes ENSPTRG00000008103 ortholog_one2one 3 retrogenes
retro_ptro_1840, retro_ptro_2379, retro_ptro_2384,

# RetrogeneDB ID Identity (%) Coverage (%) ORF conservation Expression evidence RDV
1. retro_cjac_2372 73.85 53.00
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Download FASTA sequences of all ENSCJAG00000001832 retrocopies