RetrogeneDB ID: retro_ogar_2821

Retrocopy location

• Organism: Bushbaby (Otolemur garnettii)
• Coordinates: GL873667.1:3200991..3201211(-)
• Located in intron of: ENSOGAG00000001296

Retrocopy information

• Ensembl ID: None
• Aliases: None
• Status: NOVEL

Parental gene information

• Parental gene symbol: FABP7
• Ensembl ID: ENSOGAG00000031110
• Aliases: None
• Description: fatty acid binding protein 7, brain [Source:HGNC Symbol;Acc:3562]

Sequence

>retro_ogar_2821
AAAATAGCCCAAAATAGTTTCCAAATGGGAGAAGAGTTTGATGAAAGCACTGCAGATGACAGAAACTGTAAGTCTGTTAG
CCTGGATGGAGACAAACTTATTCATTCATGTATAGAAACAGGATGGCCAAGAAACAAATTTTGTAAGAGAAATTAAGGAT
GGAAACATGGTTATGACCCTTAGTTTTGGTCATGTGGTTGCTGTTTGCCACTATGAGAAA

Alignment

ORF - retro_ogar_2821 Open Reading Frame is not conserved.

Retrocopy - Parental Gene Alignment summary:

• Percent Identity: 67.57 %
• Parental protein coverage: 55.3 %
• Number of stop codons detected: 1
• Number of frameshifts detected: 1

Retrocopy - Parental Gene Alignment:

Parental  KNTEISFHLGEEFDETTADDRNCKSV-VSLDGDKLVHVQKWDGKETNFVREIKDGKMVMTLTFGDVVAVR
          K....SF..GEEFDE.TADDRNCKSV..........HV.K.DG.ETNFVREIKDG.MVMTL.FG.VVAV.
Retrocopy KIAQNSFQMGEEFDESTADDRNCKSV>AWMETNLFIHV*KQDGQETNFVREIKDGNMVMTLSFGHVVAVC

Parental  HYEK
          HYEK
Retrocopy HYEK

Legend:

• *: Stop codon
• >: Forward frameshift by one nucleotide
• <: Reverse frameshift by one nucleotide

Expression

RNA-Seq

Otolemur garnettii was not studied using RNA-Seq expression data.

ChIP-Seq

Otolemur garnettii was not studied using ChIP-Seq data.

EST

Otolemur garnettii was not studied using EST data.

TSS

Otolemur garnettii was not studied using FANTOM5 data.

Lab

retro_ogar_2821 was not experimentally validated.

Homology

Retrocopy orthology:

Otolemur garnettii does not belong to any of the species groups (eutheria, teleost or neognath), studied for retrocopy-based homology. For more information about studied groups, please go to help section.

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Parental genes homology:

Parental genes homology involve 13 parental genes, and 25 retrocopies.

Species	Parental gene accession	Retrocopies number
Cavia porcellus	ENSCPOG00000014056	1 retrocopy	retro_cpor_34,
Homo sapiens	ENSG00000164434	1 retrocopy	retro_hsap_536,
Gorilla gorilla	ENSGGOG00000025475	1 retrocopy	retro_ggor_489,
Macaca mulatta	ENSMMUG00000021907	1 retrocopy	retro_mmul_458,
Oryctolagus cuniculus	ENSOCUG00000001497	1 retrocopy	retro_ocun_1874,
Otolemur garnettii	ENSOGAG00000002413	10 retrocopies	retro_ogar_1024, retro_ogar_1151, retro_ogar_1286, retro_ogar_1676, retro_ogar_2873, retro_ogar_3066, retro_ogar_3099, retro_ogar_3265, retro_ogar_715, retro_ogar_878,
Otolemur garnettii	ENSOGAG00000012166	1 retrocopy	retro_ogar_843,
Otolemur garnettii	ENSOGAG00000013757	4 retrocopies	retro_ogar_1148, retro_ogar_1312, retro_ogar_1873, retro_ogar_959,
Otolemur garnettii	ENSOGAG00000031110	1 retrocopy	retro_ogar_2821 ,
Ochotona princeps	ENSOPRG00000000992	1 retrocopy	retro_opri_840,
Pongo abelii	ENSPPYG00000016979	1 retrocopy	retro_pabe_213,
Pan troglodytes	ENSPTRG00000018564	1 retrocopy	retro_ptro_402,
Sarcophilus harrisii	ENSSHAG00000003313	1 retrocopy	retro_shar_521,