RetrogeneDB ID:

retro_ogar_203

Retrocopy
location
Organism:Bushbaby (Otolemur garnettii)
Coordinates:GL873533.1:1977994..1979548(+)
Located in intron of:None
Retrocopy
information
Ensembl ID:ENSOGAG00000027154
Aliases:None
Status:KNOWN_PROTEIN_CODING
Parental gene
information
Parental gene summary:
Parental gene symbol:None
Ensembl ID:ENSOGAG00000033093
Aliases:None
Description:None


Retrocopy-Parental alignment summary:






>retro_ogar_203
ATGCTGCGCCGCCTGGTGCCCCGGCTGCTTCACCTCCATGGCAGGACGGCCACATACTCCTCTGCAGCAGCCCTGCCAAA
CCCCATCCCGAACCCAGACATCCGCTACAATCAGCTGTTCATCAACAACGAGTGGCAAGATGCCGTCAGCAAGAAGACCT
TCCCAACGGTCAACCCGTCCACTGGGGAGGTCATCGGCCATGTGGCCGAAGGGGACCGAGCTGATGTGGATCGGGCTGTG
AAAGCTGCCCGGGAGGCCTTCCGCCTGGGGTCCCCGTGGCGCCGAATGGATGCCTCTGAGCGGGGCCGGCTGTTGAACCG
CCTGGCTGACCTAGTGGAGCGGGATCGTGTATACTTGGCCTCCCTGGAGACCTTGGACAATGGGAAGCCTTTCCAAGAGT
CTTATGTCTTAGACCTGGATGAGGTCATCAAGGTGTACCGCTACTTTGCTGGCTGGGCTGACAAGTGGCATGGCAAGACC
ATCCCCATGGATGGTGAGCATTTCTGCTTCACCCGGCATGAGCCGGTTGGTGTCTGTGGCCAGATAATCCCGTGGAACTT
CCCCTTGGTCATGCAGGGCTGGAAGCTCGCCCCGGCACTTGCCACAGGCAACACTGTGGTCATGAAGGTGGCGGAGCAGA
CCCCCCTTTCTGCCCTGTACTTGGCCTCCCTCATCAAGGAGGCAGGCTTCCCCCCAGGGGTGGTGAACATCATCACGGGC
TATGGCCCAACTGCAGGAGCAGCCATTGCCCAGCACATGGACATTGACAAAGTTGCCTTCACCGGCTCCACTGAAGTGGG
CCACTTGATCCAGAAGGCCGCTGGCGACTCCAACCTCAAGAGAGTCACCTTGGAGCTTGGAGGCAAGAGCCCCAGCATTG
TGTTGGCTGACGCTGACATGGGCCACGCCGTGGAACAGTGCCACGAAGCCCTCTTCTTCAACATGGGCCAGTGCTGCTGT
GCTGGGTCCCGGACCTTTGTTGAAGAATCCATCTATGATGAGTTTCTTGAGAGAACCGTGGAGAAAGCTAAGCAGAGGAA
AGTAGGGAATCCCTTTCAGCTGGACACCCAGCAGGGCCCACAGGTGGACAAAGAACAGTTTGAAAAAATCCTTGGGTATA
TCCAGCTTGGCCAGAAAGAAGGGGCAAAACTTCTCTGTGGCGGGGAGCGTTTTGGGGAGCGTGGTTTCTTCATCAAGCCT
ACAGTCTTTGGTGGTGTGCAGGATGACATGAGGATTGCCAAAGAGGAGATCTTCGGGCCCGTGCAGCCTCTGTTCAAGTT
CAAGAAGATTGAGGAGGTGATTGAGAGGGCCAACAACACCAGGTATGGCTTGGCCGCTGCTGTGTTCACCAGGGACCTGG
ACAAGGCTATGTACTTCACCCAGGCACTCCAAGCTGGGACTGTATGGGTAAACACCTATAATATTGTCACCTGCCACACA
CCATTTGGAGGCTTTAAGGAATCTGGCAATGGGAGGGAACTGGGGGAGGATGGTCTTAAGGCCTATACAGAGGTGAAGAC
GGTCACCGTCAAGGTTCCTCAGAAGAACTCCTAA

ORF - retro_ogar_203 Open Reading Frame is conserved.
Retrocopy - Parental Gene Alignment summary:
Percent Identity: 72.34 %
Parental protein coverage: 100.0 %
Number of stop codons detected: 0
Number of frameshifts detected: 0


Retrocopy - Parental Gene Alignment:

ParentalMLRAAASLGPRLGRRLLSAAATQAVPAPNQQPEVFYNQIFINNEWHDSVSKKTFPTVNPATGEVICQVAE
MLR........L..R........A.P.P...P...YNQ.FINNEW.D.VSKKTFPTVNP.TGEVI..VAE
RetrocopyMLRRLVPRLLHLHGRTATYSSAAALPNPIPNPDIRYNQLFINNEWQDAVSKKTFPTVNPSTGEVIGHVAE
ParentalGDKEDVDRAVKAARDAFQLGSPWRRMDASYRGRLLNRLADLIERDRTYLAALETLDNGKPYVISYLVDLD
GD..DVDRAVKAAR.AF.LGSPWRRMDAS.RGRLLNRLADL.ERDR.YLA.LETLDNGKP...SY..DLD
RetrocopyGDRADVDRAVKAAREAFRLGSPWRRMDASERGRLLNRLADLVERDRVYLASLETLDNGKPFQESYVLDLD
ParentalMVLKCLRYYAGWADKYHGKTIPIDGDFFSYTRHEPVGVCGQIIPWNFPLLMQAWKLGPALATGNVVVMKV
.V.K..RY.AGWADK.HGKTIP.DG..F..TRHEPVGVCGQIIPWNFPL.MQ.WKL.PALATGN.VVMKV
RetrocopyEVIKVYRYFAGWADKWHGKTIPMDGEHFCFTRHEPVGVCGQIIPWNFPLVMQGWKLAPALATGNTVVMKV
ParentalAEQTPLTALYVANLIKEAGFPPGVVNIVPGFGPTAGAALASHEDVDKVAFTGSTEIGRVIQVAAGSSNLK
AEQTPL.ALY.A.LIKEAGFPPGVVNI..G.GPTAGAA.A.H.D.DKVAFTGSTE.G..IQ.AAG.SNLK
RetrocopyAEQTPLSALYLASLIKEAGFPPGVVNIITGYGPTAGAAIAQHMDIDKVAFTGSTEVGHLIQKAAGDSNLK
ParentalRVTLELGGKSPNIIMSDADMDWAVEQAHFALFFNQGQCCCAGSRTFVQEDVYDEFVERSVARAKSRVVGN
RVTLELGGKSP.I...DADM..AVEQ.H.ALFFN.GQCCCAGSRTFV.E..YDEF.ER.V..AK.R.VGN
RetrocopyRVTLELGGKSPSIVLADADMGHAVEQCHEALFFNMGQCCCAGSRTFVEESIYDEFLERTVEKAKQRKVGN
ParentalPFDSRTEQGPQVDETQFKKILGYINSGKQEGAKLLCGGGPAADRGYYIQPTVFGDVKDGMTIAKEEIFGP
PF...T.QGPQVD..QF.KILGYI..G..EGAKLLCGG.....RG..I.PTVFG.V.D.M.IAKEEIFGP
RetrocopyPFQLDTQQGPQVDKEQFEKILGYIQLGQKEGAKLLCGGERFGERGFFIKPTVFGGVQDDMRIAKEEIFGP
ParentalVMQILKFKTIEEVVGRANNSKYGLAAAVFTKDLDKANYLSQALQAGTVWINCYDVFGAQSPFGGYKMSGS
V....KFK.IEEV..RANN..YGLAAAVFT.DLDKA.Y..QALQAGTVW.N.Y.......PFGG.K.SG.
RetrocopyVQPLFKFKKIEEVIERANNTRYGLAAAVFTRDLDKAMYFTQALQAGTVWVNTYNIVTCHTPFGGFKESGN
ParentalGRELGEYGLQAYTEVKTVTVKVPQKNS
GRELGE.GL.AYTEVKTVTVKVPQKNS
RetrocopyGRELGEDGLKAYTEVKTVTVKVPQKNS

Legend:
*Stop codon
>Forward frameshift by one nucleotide
<Reverse frameshift by one nucleotide






RNA-Seq - click to see more details

Otolemur garnettii was not studied using RNA-Seq expression data.

ChIP-Seq - click to see more details

Otolemur garnettii was not studied using ChIP-Seq data.

EST - click to see more details

Otolemur garnettii was not studied using EST data.

TSS - click to see more details

Otolemur garnettii was not studied using FANTOM5 data.

Lab - click to see more details

retro_ogar_203 was not experimentally validated.

Retrocopy orthology:
Otolemur garnettii does not belong to any of the species groups (eutheria, teleost or neognath), studied for retrocopy-based homology. For more information about studied groups, please go to help section.
Parental genes homology:
Parental genes homology involve 21 parental genes, and 22 retrocopies.

Species Parental gene accession Retrocopies number
Ailuropoda melanoleuca ENSAMEG000000136641 retrocopy
retro_amel_51,
Bos taurus ENSBTAG000000087431 retrocopy
retro_btau_48,
Canis familiaris ENSCAFG000000086831 retrocopy
retro_cfam_1493,
Equus caballus ENSECAG000000176732 retrocopies
retro_ecab_1054, retro_ecab_1061,
Felis catus ENSFCAG000000220001 retrocopy
retro_fcat_1590,
Homo sapiens ENSG000001112751 retrocopy
retro_hsap_19,
Gorilla gorilla ENSGGOG000000071081 retrocopy
retro_ggor_33,
Latimeria chalumnae ENSLACG000000117981 retrocopy
retro_lcha_108,
Microcebus murinus ENSMICG000000034871 retrocopy
retro_mmur_19,
Myotis lucifugus ENSMLUG000000170841 retrocopy
retro_mluc_1918,
Macaca mulatta ENSMMUG000000083361 retrocopy
retro_mmul_247,
Mustela putorius furoENSMPUG000000022821 retrocopy
retro_mputfur_27,
Mus musculus ENSMUSG000000294551 retrocopy
retro_mmus_222,
Nomascus leucogenys ENSNLEG000000000161 retrocopy
retro_nleu_22,
Otolemur garnettii ENSOGAG00000033093 1 retrocopy
retro_ogar_203 ,
Pongo abelii ENSPPYG000000049661 retrocopy
retro_pabe_32,
Pteropus vampyrus ENSPVAG000000131891 retrocopy
retro_pvam_163,
Rattus norvegicus ENSRNOG000000013441 retrocopy
retro_rnor_307,
Sus scrofa ENSSSCG000000098891 retrocopy
retro_sscr_9,
Ictidomys tridecemlineatus ENSSTOG000000150091 retrocopy
retro_itri_33,
Xenopus tropicalis ENSXETG000000209301 retrocopy
retro_xtro_12,


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