RetrogeneDB ID: retro_nleu_88

Retrocopy location

• Organism: Gibbon (Nomascus leucogenys)
• Coordinates: GL397342.1:5457965..5459183(+)
• Located in intron of: None

Retrocopy information

• Ensembl ID: ENSNLEG00000019205
• Aliases: None
• Status: KNOWN_PROTEIN_CODING

Parental gene information

• Parental gene symbol: NKAP
• Ensembl ID: ENSNLEG00000014922
• Aliases: None
• Description: None

Sequence

>retro_nleu_88
ATGCCCCCGGTATCCCGGTCCACCTATTCCGAGGACATCATGGGCTCTCGGAGAACAGGACGCAGCTCCTCGGGGAGCCC
ACCATCCCCGCAGAGCAGATGTTCCTCTTGGGATGGCCGTTCCCGCTCTCACTCCCGCGGCCGTGAGGGCCTCAGGCCTC
CTTGGAGTGAGTCGGACGTGGGCGCTCTTTACCCCTTTAGTCGCTCTGGGTCGCGAGGGCGGCCCCCAGGATTCCGCAAC
TACGCCTTCGCGTCCTCTTGGTCGACCTCGTATAGTGGATATCGCTGCCATCACCACTACTGTGCAGAAGAACGGCAGTC
GGCGGAAGACTACGAGAAGGAAGAGAGCTATCGGCAGAGGAGGCTGAAGGAGAGAGAGAGGATTGGGGAGTTGGGAGCGC
CTGAAGTGTGGGGGCCGTGTCCAAAGTTCCCTGAGCCAGATTCTGACGAACATAGCCCAGTTGAGGATGAAGAAGAGGTA
ACGCATCAGAAAAGCAGCAGTTCAGATTCCAACTCGGAAGAACATAGGAAAAAGAAGACCAGTCGTTCAAGAAACAAGAG
AAAAAGAAAGAATAAGTCGTCTAAAAGAAAGCATAGGAAGTATTCTGATAGTGACAGTAACTCAGAGTCTGACACAAATT
CTAACTCTGATGATGATAAAAAGAGAGTTAAAGCCAAGAAGAAAGAGAAGAAAAAGAAACACAAAACAAAGAAAAACAAG
AAAAAGAAGAATAAGAAGACCAAAAAAGAATCCAGTGACTCAAGCTGTAAAGACTCAGAAGAGGAGTTGTCAGAAGATAC
CTGGATGGAGCAGCCAAATGTGGCAGATACTATGGATTTAATAGGGCCAGAAGCACCTATAATACATACCTCTCAAGATG
AGAAACCTTTGAACTATGGCCATGCTTTGCTCCCAGGTGAAGGTGCAGCTATGGCTGAGTATGTAAAAGCTGGAAAGCGA
ATCCCGCGCAGAGGTGAAATTGGGTTGACAAGTGAGGAGATCGCTTCTTTTGAATGCTCAGGTTATGTCATGAGTGGTAG
CAGGCATCGCAGGATGGAGGCTGTACGACTGCGTAAGGAGAACCAGATCTACAGTGCTGATGAGAAGAGAGCTCTTGCAT
CCTTTAACCAAGAAGAGAGACGACAGAGAGAAAATAAGATTTTAGCCAGTTTCCGAGAGATGGTGTACAAAAAGACAAAA
GGGAAAGATGACAAGTAA

Alignment

ORF - retro_nleu_88 Open Reading Frame is conserved.

Retrocopy - Parental Gene Alignment summary:

• Percent Identity: 71.14 %
• Parental protein coverage: 81.93 %
• Number of stop codons detected: 0
• Number of frameshifts detected: 0

Retrocopy - Parental Gene Alignment:

Parental  SRSRSRERPSAPRGIPFASASSSVYYGSYSRPYGSDKPWPSLLDKEREESLRQKRLSERERIGELGAPEV
          SRS.SR.RP...R...FAS..S..Y.G.............S..D.E.EES.RQ.RL.ERERIGELGAPEV
Retrocopy SRSGSRGRPPGFRNYAFASSWSTSYSGYRCHHHYCAEERQSAEDYEKEESYRQRRLKERERIGELGAPEV

Parental  WGLSPKNPEPDSDEHTPVEDEEP---KKSTTSASTSEEKKKKKSSHSKERSKKRRKKKSSKRKHKKYSED
          WG..PK.PEPDSDEH.PVEDEE.....KS..S.S.SEE..KKK.S.S..R.K..RK.KSSKRKH.KYS.D
Retrocopy WGPCPKFPEPDSDEHSPVEDEEEVTHQKSSSSDSNSEEHRKKKTSRS--RNKRKRKNKSSKRKHRKYS-D

Parental  SDSDSDSETDSSDEDNKRRAKKAKKKEKKKKHRSKKYKKKRSKKSRKESSDSSSKESQEEFLENPWKDRT
          SDS.S.S.T.S...D.K.R.K.AKKKEKKKKH..KK.KKK..KK..KESSDSS.K.S.EE..E..W....
Retrocopy SDSNSESDTNSNSDDDKKRVK-AKKKEKKKKHKTKKNKKKKNKKTKKESSDSSCKDSEEELSEDTWMEQP

Parental  KAEEPSDLIGPEAPKTLTSQDDKPLNYGHALLPGEGAAMAEYVKAGKRIPRRGEIGLTSEEIASFECSGY
          ......DLIGPEAP...TSQD.KPLNYGHALLPGEGAAMAEYVKAGKRIPRRGEIGLTSEEIASFECSGY
Retrocopy NVADTMDLIGPEAPIIHTSQDEKPLNYGHALLPGEGAAMAEYVKAGKRIPRRGEIGLTSEEIASFECSGY

Parental  VMSGSRHRRMEAVRLRKENQIYSADEKRALASFNQEERRKRENKILASFREMVYRKTKGKDDK
          VMSGSRHRRMEAVRLRKENQIYSADEKRALASFNQEERR.RENKILASFREMVY.KTKGKDDK
Retrocopy VMSGSRHRRMEAVRLRKENQIYSADEKRALASFNQEERRQRENKILASFREMVYKKTKGKDDK

Legend:

• *: Stop codon
• >: Forward frameshift by one nucleotide
• <: Reverse frameshift by one nucleotide

Expression

RNA-Seq

Nomascus leucogenys was not studied using RNA-Seq expression data.

ChIP-Seq

Nomascus leucogenys was not studied using ChIP-Seq data.

EST

Nomascus leucogenys was not studied using EST data.

TSS

Nomascus leucogenys was not studied using FANTOM5 data.

Lab

retro_nleu_88 was not experimentally validated.

Homology

Retrocopy orthology:

Nomascus leucogenys does not belong to any of the species groups (eutheria, teleost or neognath), studied for retrocopy-based homology. For more information about studied groups, please go to help section.

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Parental genes homology:

Parental genes homology involve 15 parental genes, and 15 retrocopies.

Species	Parental gene accession	Retrocopies number
Canis familiaris	ENSCAFG00000018433	1 retrocopy	retro_cfam_172,
Dasypus novemcinctus	ENSDNOG00000000072	1 retrocopy	retro_dnov_50,
Echinops telfairi	ENSETEG00000001007	1 retrocopy	retro_etel_1882,
Felis catus	ENSFCAG00000004392	1 retrocopy	retro_fcat_10,
Homo sapiens	ENSG00000101882	1 retrocopy	retro_hsap_15,
Loxodonta africana	ENSLAFG00000002962	1 retrocopy	retro_lafr_37,
Macaca mulatta	ENSMMUG00000012382	1 retrocopy	retro_mmul_121,
Mus musculus	ENSMUSG00000016409	1 retrocopy	retro_mmus_279,
Nomascus leucogenys	ENSNLEG00000014922	1 retrocopy	retro_nleu_88 ,
Otolemur garnettii	ENSOGAG00000001004	1 retrocopy	retro_ogar_239,
Pongo abelii	ENSPPYG00000020679	1 retrocopy	retro_pabe_198,
Pan troglodytes	ENSPTRG00000022233	1 retrocopy	retro_ptro_117,
Rattus norvegicus	ENSRNOG00000031169	1 retrocopy	retro_rnor_93,
Sus scrofa	ENSSSCG00000012613	1 retrocopy	retro_sscr_13,
Ictidomys tridecemlineatus	ENSSTOG00000001134	1 retrocopy	retro_itri_73,