Parental gene:

NKAP, ENSSSCG00000012613

Aliases:None
Description:NFKB activating protein [Source:HGNC Symbol;Acc:29873]
Organism:Pig (Sus scrofa)
Coordinates:X:113335114..113355493(+)


>ENSSSCG00000012613
ATGGCTCCGGTGTCTGGCTCCCGCAGCCCAGAGTGGGAGGCCTCAGGTTCCGGGGGGAAGCGTCGCAGTTCGTCGAAGAG
CCCTAAGCCTTGCAGCAAATCCTCTCGCTCCCCGCGGGGCCGCCGCTCTCGCTCGCACTCTTGCTCTCGGTCCGGGGACC
GGAATGGCCTTAGCCATCAGTCGAGTGGCCCCAGCCAAGGCTCCAGAAACCAGTCCTACAGATCCCGTTCTCGGTCACGC
TCTCGAGAGCGGCCCTCGGCTCCGCGGGGCGCCCCTTTCGCTTCTGCCTCGTCCGCCTATTATGGCGGCTACTCACGCCC
CTACGGCAGTGACAAGCCATGGCCTAGCCTCCTGGACAAGGAGAGGGAGGAGAGCCTGCGGCAGAAGAGATTAAGTGAGA
GAGAGAGGATTGGAGAACTTGGAGCTCCTGAAGTATGGGGACTTTCTCCAAAGAATCCAGAACCAGACTCTGATGAACAT
ACACCAGTAGAGGATGAAGAGCCAAAGAAAAGCACCACTTCAGCTTCTACTTCAGAAGAAGAGAAGAAGAGGAAGAAGAA
GTCTGGTCATTCAAAAGAAAGATCCAAGAAAAGGAGAAAGAAAAAATCATCTAAAAGAAAACACAAAAAGTATTCTGACG
ATAGTGACAGTGACTCTGATTCTGATACAGACTCCAGTGATGAAGATACAAAAAGGAGAGCAAAGAAATCCAAGAAAAAA
GAAAAGAAGAAGAAACGCAGATCGAAGAAATATAAGAAAAAGAAGTCTAAGAAGAGCAGAAAAGATTCCAGCGATTCAAG
TTCTAAAGAGTCCCAGGAAGAGTTGCTGGAGAATCCCTGGAAGGATCGATCAAAGCCTGAAGAACCCTCTGATTTGATTG
GCCCAGAGGCTCCCAAAACACTTGCCTCTCAAGATGATAAACCTTTGAACTATGGCCATGCTCTGTTACCTGGTGAAGGT
GCAGCTATGGCTGAATATGTAAAAGCTGGAAAACGTATCCCACGAAGAGGTGAAATTGGCCTGACAAGTGAAGAAATTGC
ATCATTTGAATGCTCGGGTTATGTAATGAGTGGTAGCAGGCATCGCCGGATGGAGGCTGTGCGACTGCGAAAAGAGAACC
AGATCTATAGTGCTGATGAGAAGAGAGCCCTTGCATCCTTTAACCAAGAAGAGAGACGGAAGAGAGAAAACAAGATTCTG
GCCAGTTTTCGAGAGATGGTATACAGAAAAACTAAAGGGAAAGAGGACAAGTAA

Library Parental gene expression (RPM)
SRP014902_placenta 9 .42 RPM
SRP014902_testis 12 .02 RPM
SRP018288_heart 9 .04 RPM
SRP018288_kidney 15 .27 RPM
SRP018288_liver 8 .16 RPM
SRP018288_lung 14 .15 RPM
SRP018856_adipose 17 .13 RPM
SRP035408_brain 55 .74 RPM
SRP035408_liver 27 .33 RPM



Species Parental gene accession Homology type Retrogenes number
Canis familiaris ENSCAFG00000018433 ortholog_one2one 1 retrogene
retro_cfam_172,
Dasypus novemcinctus ENSDNOG00000000072 ortholog_one2one 1 retrogene
retro_dnov_50,
Echinops telfairi ENSETEG00000001007 ortholog_one2many 1 retrogene
retro_etel_1882,
Felis catus ENSFCAG00000004392 ortholog_one2one 1 retrogene
retro_fcat_10,
Homo sapiens ENSG00000101882 ortholog_one2one 1 retrogene
retro_hsap_15,
Loxodonta africana ENSLAFG00000002962 ortholog_one2one 1 retrogene
retro_lafr_37,
Macaca mulatta ENSMMUG00000012382 ortholog_one2one 1 retrogene
retro_mmul_121,
Mus musculus ENSMUSG00000016409 ortholog_one2one 1 retrogene
retro_mmus_279,
Nomascus leucogenys ENSNLEG00000014922 ortholog_one2one 1 retrogene
retro_nleu_88,
Otolemur garnettii ENSOGAG00000001004 ortholog_one2one 1 retrogene
retro_ogar_239,
Pongo abelii ENSPPYG00000020679 ortholog_one2one 1 retrogene
retro_pabe_198,
Pan troglodytes ENSPTRG00000022233 ortholog_one2one 1 retrogene
retro_ptro_117,
Rattus norvegicus ENSRNOG00000031169 ortholog_one2one 1 retrogene
retro_rnor_93,
Ictidomys tridecemlineatus ENSSTOG00000001134 ortholog_one2one 1 retrogene
retro_itri_73,

# RetrogeneDB ID Identity (%) Coverage (%) ORF conservation Expression evidence RDV
1. retro_sscr_13 68.29 92.81
Please wait, loading
Please wait, loading
Please wait, loading
Download FASTA sequences of all ENSSSCG00000012613 retrocopies