Parental gene:

NKAP, ENSCAFG00000018433

Aliases:None
Description:NFKB activating protein [Source:HGNC Symbol;Acc:29873]
Organism:Dog (Canis familiaris)
Coordinates:X:91923632..91956414(-)


>ENSCAFG00000018433
ATGGCTCCAGTGTCGGGTTCCCGCAGCCCAGAGAGGGAGGCCTCGGGCTCCGGGTCGAAGCGTCGCAGCTCGTCAAAGAG
CCCTAAGCCCAGCAGATCCGCCCGCTCCCCGCGGGGCCGCCGCTCGCGCTCGAGCTCTCGCTCGCACTCCTGCTCTCGCT
CTGGGGACCGGAATGGTCTCAGCCATCAGCTGGGTGGCTTCAGCCAAGGGTCCCGAAACCAGTCCTACCGATCCCGCTCC
CGATCCCGCTCCCGGGAGCGGCCCTCTGCGCCGCGGGGTAACCCCTTCTTTTCTGCCTCCTCGACTGCGTATTATGGCGG
CTACCGTCCCTACGGAAGTGACAAGCCGTGGCCTAGCCGCCTTCCTGAATGGAAGCAGAAACAAGAAAAACAGAAGAGAT
TAAGTGAGAGAGAAAGGATTGGAGAATTGGGAGCTCCTGAAGTATGGGGACTTTCTCCAAAGAATCCAGAACCAGACTCT
GATGAACACACACCAGTAGAGGATGATGAGCCAAAGAAAAGCAGCACTTCAGCTTCTACTTCAGAAGAAGAAAAGAAGAA
GAAGAAGAAGTCTGGTCATTCGAAAGAAAGGTCCAAGAAAAGGAGAAAGAAAAAATCCTCTAAAAGAAAACACAAGAAGT
ATTCCGATGACAGTGACAGTGACTCTGACTCTGACACAGACTCCAGTGGCCAGCCTGATAATGTGAAACATGATTTGGTT
AAATACCTTTCATTGCCTAAAAAATATTATAATTACAGGAAGAAATACAAGAAAAAGAAATCTAAGAAGAGTAGAAAAGA
TTCCAGTGATTCAAGCTCTAAAGATTCCCAGGAAGAGTTTCTGGAGAATCCCTGGAAGGATCGATCAAAGCCTGAAGAAC
CCTCAGATTTAATTGGCCCAGAGGCTCCAAAAACACTTGCCTCTCAGGATGATAAACCTTTGAACTATGGCCATGCTCTG
TTACCTGGTGAGGGTGCAGCTATGGCTGAATATGTAAAAGCTGGGAAACGTATCCCAAGAAGAGGTGAAATTGGCTTGAC
AAGTGAAGAAATTGCATCATTTGAATGCTCGGGTTATGTAATGAGTGGTAGCAGGCATCGCCGAATGGAGGCCGTGCGAC
TGCGGAAAGAGAACCAGATCTATAGTGCTGATGAGAAGAGAGCCCTGGCGTCCTTTAACCAAGAAGAGAGGCGAAAGAGA
GAAAACAAGATTCTGGCCAGTTTTCGAGAGATGGTATACAGAAAAACTAAAGGGAAAGATGACAAATAA

Library Parental gene expression (RPM)
SRP012049_cerebellum 11 .00 RPM
SRP017611_brain 9 .53 RPM
SRP017611_kidney 11 .69 RPM
SRP017611_liver 6 .67 RPM



Species Parental gene accession Homology type Retrogenes number
Dasypus novemcinctus ENSDNOG00000000072 ortholog_one2one 1 retrogene
retro_dnov_50,
Echinops telfairi ENSETEG00000001007 ortholog_one2many 1 retrogene
retro_etel_1882,
Felis catus ENSFCAG00000004392 ortholog_one2one 1 retrogene
retro_fcat_10,
Homo sapiens ENSG00000101882 ortholog_one2one 1 retrogene
retro_hsap_15,
Loxodonta africana ENSLAFG00000002962 ortholog_one2one 1 retrogene
retro_lafr_37,
Macaca mulatta ENSMMUG00000012382 ortholog_one2one 1 retrogene
retro_mmul_121,
Mus musculus ENSMUSG00000016409 ortholog_one2one 1 retrogene
retro_mmus_279,
Nomascus leucogenys ENSNLEG00000014922 ortholog_one2one 1 retrogene
retro_nleu_88,
Otolemur garnettii ENSOGAG00000001004 ortholog_one2one 1 retrogene
retro_ogar_239,
Pongo abelii ENSPPYG00000020679 ortholog_one2one 1 retrogene
retro_pabe_198,
Pan troglodytes ENSPTRG00000022233 ortholog_one2one 1 retrogene
retro_ptro_117,
Rattus norvegicus ENSRNOG00000031169 ortholog_one2one 1 retrogene
retro_rnor_93,
Sus scrofa ENSSSCG00000012613 ortholog_one2one 1 retrogene
retro_sscr_13,
Ictidomys tridecemlineatus ENSSTOG00000001134 ortholog_one2one 1 retrogene
retro_itri_73,

# RetrogeneDB ID Identity (%) Coverage (%) ORF conservation Expression evidence RDV
1. retro_cfam_172 77.78 93.51
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Download FASTA sequences of all ENSCAFG00000018433 retrocopies