RetrogeneDB ID: retro_nleu_746

Retrocopy location

• Organism: Gibbon (Nomascus leucogenys)
• Coordinates: GL397272.1:20716285..20716910(+)
• Located in intron of: None

Retrocopy information

• Ensembl ID: None
• Aliases: None
• Status: NOVEL

Parental gene information

• Parental gene symbol: WDR77
• Ensembl ID: ENSNLEG00000003918
• Aliases: None
• Description: None

Sequence

>retro_nleu_746
CTACCCTCAGTGTTCTCGGCTGTCAGCGGCAGCAAAGACTTCAGCATCAAGGATTGGGACCTTGTTCAGCAGGTGGCACT
GAATTCATACCGATCTCATGCTGGGCAGGTCACCTGTGCTGCTGCCTCTCCCCGCAAGGACTGTGTGTTTCTTTCCTGCA
GTGAAGACAGTAGAATTTTGTTCTGGAATACTCTCTGTCCCAAGCCAACGTCACAGGTGGGCTGCAGTGCCTCTGGCTGC
CTTCCCACCTCACTGGCTTGGCATCCTCAGCAAAGTGAAGTCTTCATCTTTGTGATGAGAATGGGACTATCTCCGTTGTG
GACACCAAGAGAGGGAGAGGTGCCCTTGGCTCAGCTGTACAAGACCAATGTGTCATTGGGCTGGTGTTTTCCTCACACGG
TGTTCCCTTCCCGGGCTCTTACAGCGAAGATGGCTCACTGGCTGTGCTGGACTCCAGCCTTACTGAGGTCTTTAGAAGCC
GAGGCCACAGTGACCTTGCCAGAGATGCTGCTTGATCCCCACTCAATCACTTTCTGCTTACCACAATGGGCTGGGACCAT
CAGGTCGTCTGCCACAAGTGCCCACAGAACCTCTCCCAGCCCCTGGACCTGAGAGCGTTGCTGAG

Alignment

ORF - retro_nleu_746 Open Reading Frame is not conserved.

Retrocopy - Parental Gene Alignment summary:

• Percent Identity: 72.99 %
• Parental protein coverage: 61.11 %
• Number of stop codons detected: 1
• Number of frameshifts detected: 2

Retrocopy - Parental Gene Alignment:

Parental  LSSGTQAVSGSKDFCIKVWDLAQQVVLNSYRAHAAQVTCVAASPHKDSVFLSCSEDNRILLWDTRCPKPA
          L.S...AVSGSKDF.IK.WDL.QQV.LNSYR.HA.QVTC.AASP.KD.VFLSCSED.RIL.W.T.CPKP.
Retrocopy LPSVFSAVSGSKDFSIKDWDLVQQVALNSYRSHAGQVTCAAASPRKDCVFLSCSEDSRILFWNTLCPKPT

Parental  SQIGCSVPGYLPTSLAWHPQQSEAFVF-GDENGTVSLVDTKSTSCVLSSAVHSQCVTGLVFSPHSVPFLA
          SQ.GCS..G.LPTSLAWHPQQSE.F.F..DENGT.S.VDTK.....L.SAV..QCV.GLVFS.H.VPF..
Retrocopy SQVGCSASGCLPTSLAWHPQQSEVFIF<CDENGTISVVDTKRGRGALGSAVQDQCVIGLVFSSHGVPFPG

Parental  SLSEDCSLAVLDSSLSEVFRSRAHRDFVRDATWSPLNHSLLTTVGWDHQVVHH-IVPTEPLPAPGPASVT
          S.SED.SLAVLDSSL.EVFRSR.H.D..RDA..SPLNH.LLTT.GWDHQVV.H..VPTEPLPAPGP.SV.
Retrocopy SYSEDGSLAVLDSSLTEVFRSRGHSDLARDAA*SPLNHFLLTTMGWDHQVVCH<QVPTEPLPAPGPESVA

Parental  E
          E
Retrocopy E

Legend:

• *: Stop codon
• >: Forward frameshift by one nucleotide
• <: Reverse frameshift by one nucleotide

Expression

RNA-Seq

Nomascus leucogenys was not studied using RNA-Seq expression data.

ChIP-Seq

Nomascus leucogenys was not studied using ChIP-Seq data.

EST

Nomascus leucogenys was not studied using EST data.

TSS

Nomascus leucogenys was not studied using FANTOM5 data.

Lab

retro_nleu_746 was not experimentally validated.

Homology

Retrocopy orthology:

Nomascus leucogenys does not belong to any of the species groups (eutheria, teleost or neognath), studied for retrocopy-based homology. For more information about studied groups, please go to help section.

---

Parental genes homology:

Parental genes homology involve 13 parental genes, and 14 retrocopies.

Species	Parental gene accession	Retrocopies number
Bos taurus	ENSBTAG00000014102	1 retrocopy	retro_btau_1342,
Choloepus hoffmanni	ENSCHOG00000013829	1 retrocopy	retro_chof_2618,
Callithrix jacchus	ENSCJAG00000013344	2 retrocopies	retro_cjac_1166, retro_cjac_3063,
Dasypus novemcinctus	ENSDNOG00000006521	1 retrocopy	retro_dnov_695,
Homo sapiens	ENSG00000116455	1 retrocopy	retro_hsap_2995,
Gorilla gorilla	ENSGGOG00000005208	1 retrocopy	retro_ggor_2076,
Macaca mulatta	ENSMMUG00000003311	1 retrocopy	retro_mmul_1917,
Mus musculus	ENSMUSG00000000561	1 retrocopy	retro_mmus_1120,
Nomascus leucogenys	ENSNLEG00000003918	1 retrocopy	retro_nleu_746 ,
Oryctolagus cuniculus	ENSOCUG00000007801	1 retrocopy	retro_ocun_535,
Pongo abelii	ENSPPYG00000001033	1 retrocopy	retro_pabe_2482,
Pan troglodytes	ENSPTRG00000001098	1 retrocopy	retro_ptro_2026,
Tupaia belangeri	ENSTBEG00000010325	1 retrocopy	retro_tbel_2253,