RetrogeneDB ID: retro_mputfur_178

Retrocopy location

• Organism: Ferret (Mustela putorius furo)
• Coordinates: GL897111.1:1882208..1883525(+)
• Located in intron of: None

Retrocopy information

• Ensembl ID: ENSMPUG00000018760
• Aliases: None
• Status: KNOWN_PROTEIN_CODING

Parental gene information

• Parental gene symbol: None
• Ensembl ID: ENSMPUG00000013943
• Aliases: None
• Description: None

Sequence

>retro_mputfur_178
ATGGGGAAATCTTTCGCCAATTTCATGTGCAAGAAGGACTTTCATCCCGCCTCCAAGTCCAATATCAAAAAAGTATGGAT
GGCAGAACAGAAAATATCATATGATAAGAAGAAACAAGAAGAATTAATGCAACAATATCTTAAAGAACAAGAATCATATG
ATAATAGGTTGCTTATGGGAGATGAACGTGTAAAGAATGGCCTTAATTTCATGTATGAGGCCCCACCAGGAGCTAAAAAA
GAAAACAAAGAGAAAGAAGAAACAGAAGGAGAGACTGAATACAAATTTGAATGGCAGAAAGGAGCCCCCCGGGAAAAATA
TGCCAAAGATGACATGAACATCAGAGATCAGCCCTTTGGTATTCAGGTTCGAAATGTGAGGTGCATTAAATGTCACAAAT
GGGGTCATGTCAACACAGATCGAGAATGTCCTCTGTTTGGTCTTTCTGGAATCAATGCAAGTTCAGTTCCCACTGATGGC
TCAGGGCCATCGATGCACCCCTCGGAGCTAATAGCGGAGATGAGAAACAGTGGGTTTGCACTGAAACGAAATGTACTGGG
GAGAAACTTGACCGCAAATGATCCATCACAGGAATATGTTGCAAGTGAAGGTGAAGAAGATCCAGAAGTCGAATTTTTAA
AGTCACTGACAACCAAACAAAAGCAGAAACTTCTCAGGAAATTGGACCGGCTTGAGAAGAAAAAAAAGAAAAAGAAAAAA
GATAGAAAAAAGAAAAAGCTTCAGAAGAGCAGAAGTAAACACAAAAAACATAAAAATAGGTCCCCCTCCTCCTCTTCGTC
CTCCTCCTCCCCCTCCTCCTCCTCCTCCAGTGAGACTTCAGAAAGCAGCAGTGAGAGTGACAACAAAGAAAAGAAAATAC
AAAAGAAGAAAAGAAAGAAAAATAAGTGTTCAGGGAATAACAACAGTGATTGTGAAGAGAAGGACAAGTCTAAGAAGAGA
AAACTTCATGAAGAACTTTCTAGCAGTCACCATAACAAAGAAAAGGCCAAGGAAAAGCCTAGGTTTTTAAAACAAGAAAG
TTCTAGGGAGCATAGCAAATGGAGCCATTCTGATTCTGACAAAAAGTCCAGAAGCCATAACCGGAGCCCAGAGAGGAGAG
GATCTGAAAGAAATGAGAGGAGCAGCAGGAGCCAGAGCAGGGATGAGAGGGGTAGGAGAAGCAGAAGCAGAAGTCACGGT
AGTTACAAGCAAAGAGAAATAAGAAAACGGTCACAGCGAAGTCCCAGTGAAGAGCGGAATGGAAGAAGGGACACCAGGAG
CCATGGCACAGATGTATACAGAGGAGAAAGAGCGCAC

Alignment

ORF - retro_mputfur_178 Open Reading Frame is conserved.

Retrocopy - Parental Gene Alignment summary:

• Percent Identity: 99.52 %
• Parental protein coverage: 95.83 %
• Number of stop codons detected: 0
• Number of frameshifts detected: 0

Retrocopy - Parental Gene Alignment:

Parental  MGKSFANFMCKKDFHPASKSNIKKVWMAEQKISYDKKKQEELMQQYLKEQESYDNRLLMGDERVKNGLNF
          MGKSFANFMCKKDFHPASKSNIKKVWMAEQKISYDKKKQEELMQQYLKEQESYDNRLLMGDERVKNGLNF
Retrocopy MGKSFANFMCKKDFHPASKSNIKKVWMAEQKISYDKKKQEELMQQYLKEQESYDNRLLMGDERVKNGLNF

Parental  MYEAPPGAKKENKEKEETEGETEYKFEWQKGAPREKYAKDDMNIRDQPFGIQVRNVRCIKCHKWGHVNTD
          MYEAPPGAKKENKEKEETEGETEYKFEWQKGAPREKYAKDDMNIRDQPFGIQVRNVRCIKCHKWGHVNTD
Retrocopy MYEAPPGAKKENKEKEETEGETEYKFEWQKGAPREKYAKDDMNIRDQPFGIQVRNVRCIKCHKWGHVNTD

Parental  RECPLFGLSGINASSVPTDGSGPSMHPSELIAEMRNSGFALKRNVLGRNLTANDPSQEYVASEGEEDPEV
          RECPLFGLSGINASSVPTDGSGPSMHPSELIAEMRNSGFALKRNVLGRNLTANDPSQEYVASEGEEDPEV
Retrocopy RECPLFGLSGINASSVPTDGSGPSMHPSELIAEMRNSGFALKRNVLGRNLTANDPSQEYVASEGEEDPEV

Parental  EFLKSLTTKQKQKLLSNRKLDRLEKKKKKKKKDRKKKKLQKSRSKHKKHKNRSPSSSSSSSSPSSSSSSE
          EFLKSLTTKQKQKLL..RKLDRLEKKKKKKKKDRKKKKLQKSRSKHKKHKNRSPSSSSSSSSPSSSSSSE
Retrocopy EFLKSLTTKQKQKLL--RKLDRLEKKKKKKKKDRKKKKLQKSRSKHKKHKNRSPSSSSSSSSPSSSSSSE

Parental  TSESSSESDNKEKKIQKKKRKKNKCSGNNNSDCEEKDKSKKRKLHEELSSSHHNKEKAKEKPRFLKQESS
          TSESSSESDNKEKKIQKKKRKKNKCSGNNNSDCEEKDKSKKRKLHEELSSSHHNKEKAKEKPRFLKQESS
Retrocopy TSESSSESDNKEKKIQKKKRKKNKCSGNNNSDCEEKDKSKKRKLHEELSSSHHNKEKAKEKPRFLKQESS

Parental  REHSKWSHSDSDKKSRSHNRSPERRGSERNERSSRSQSRDERGRRSRSRSHGSYKQREIRKRSQ
          REHSKWSHSDSDKKSRSHNRSPERRGSERNERSSRSQSRDERGRRSRSRSHGSYKQREIRKRSQ
Retrocopy REHSKWSHSDSDKKSRSHNRSPERRGSERNERSSRSQSRDERGRRSRSRSHGSYKQREIRKRSQ

Legend:

• *: Stop codon
• >: Forward frameshift by one nucleotide
• <: Reverse frameshift by one nucleotide

Expression

RNA-Seq

Mustela putorius furo was not studied using RNA-Seq expression data.

ChIP-Seq

Mustela putorius furo was not studied using ChIP-Seq data.

EST

No EST(s) were mapped for retro_mputfur_178 retrocopy.

TSS

Mustela putorius furo was not studied using FANTOM5 data.

Lab

retro_mputfur_178 was not experimentally validated.

Homology

Retrocopy orthology:

Mustela putorius furo does not belong to any of the species groups (eutheria, teleost or neognath), studied for retrocopy-based homology. For more information about studied groups, please go to help section.

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Parental genes homology:

Parental genes homology involve 7 parental genes, and 12 retrocopies.

Species	Parental gene accession	Retrocopies number
Callithrix jacchus	ENSCJAG00000007884	1 retrocopy	retro_cjac_2152,
Homo sapiens	ENSG00000138433	2 retrocopies	retro_hsap_3082, retro_hsap_3394,
Macaca mulatta	ENSMMUG00000023006	1 retrocopy	retro_mmul_1967,
Mustela putorius furo	ENSMPUG00000013943	1 retrocopy	retro_mputfur_178 ,
Mus musculus	ENSMUSG00000041777	2 retrocopies	retro_mmus_2064, retro_mmus_3104,
Nomascus leucogenys	ENSNLEG00000005869	3 retrocopies	retro_nleu_1540, retro_nleu_2013, retro_nleu_2691,
Pan troglodytes	ENSPTRG00000012652	2 retrocopies	retro_ptro_2079, retro_ptro_2306,