Parental gene:

CIR1, ENSG00000138433

Aliases:CIR1, CIR
Description:corepressor interacting with RBPJ, 1 [Source:HGNC Symbol;Acc:24217]
Organism:Human (Homo sapiens)
Coordinates:2:175212749..175260443(-)


>ENSG00000138433
ATGGGGAAATCCTTCGCCAACTTCATGTGCAAGAAAGACTTTCATCCTGCCTCCAAATCCAATATCAAAAAAGTATGGAT
GGCAGAACAGAAAATATCATATGATAAGAAGAAACAAGAAGAATTGATGCAGCAATATCTTAAAGAACAAGAATCATATG
ATAATAGATTGCTTATGGGAGATGAACGTGTAAAGAATGGCCTTAATTTCATGTATGAAGCCCCACCAGGAGCTAAAAAA
GAAAACAAAGAGAAAGAAGAAACAGAAGGAGAGACCGAATACAAATTTGAATGGCAGAAAGGAGCCCCACGAGAAAAATA
TGCCAAAGATGACATGAACATCAGAGATCAGCCCTTTGGTATTCAGGTTCGAAATGTGAGGTGCATTAAATGTCACAAAT
GGGGTCATGTCAACACAGATCGAGAATGTCCTTTGTTTGGTCTTTCTGGAATCAATGCAAGTTCGGTTCCCACTGATGGC
TCAGGGCCATCGATGCACCCCTCGGAGCTAATAGCGGAGATGAGAAACAGTGGGTTTGCACTGAAACGAAATGTACTGGG
GAGAAACTTGACCGCAAATGATCCATCACAGGAGTATGTTGCAAGTGAGGGTGAAGAAGATCCAGAAGTTGAATTTTTAA
AGTCACTAACAACCAAACAAAAACAGAAACTTCTCAGGAAATTAGATCGACTGGAGAAGAAAAAAAAGAAAAAAGATAGA
AAAAAGAAAAAGTTTCAGAAGAGCAGAAGTAAACACAAAAAACATAAGTCCTCTTCTTCCTCATCTTCCTCCTCCTCCTC
CTCTTCCTCTACTGAGACTTCAGAAAGCAGTAGTGAGAGTGAGAGTAACAATAAAGAAAAAAAAATACAAAGGAAGAAAA
GAAAGAAAAACAAGTGTTCAGGGCATAACAACAGTGATTCTGAAGAGAAGGACAAGTCTAAGAAGAGAAAGCTTCATGAA
GAACTTTCTAGCAGTCACCATAACCGGGAAAAAGCCAAGGAAAAGCCCAGGTTCTTAAAACACGAGAGTTCTAGGGAGGA
CAGCAAATGGAGCCATTCTGATTCTGACAAAAAGTCCAGAACCCATAAACATAGCCCAGAGAAGAGAGGCTCTGAAAGAA
AGGAGGGGAGCAGCAGAAGCCACGGCAGGGAGGAAAGGAGCCGGAGAAGCCGGAGCAGAAGTCCTGGTAGTTACAAGCAA
AGGGAGACAAGGAAACGGGCACAGCGAAATCCTGGTGAAGAGCAAAGCAGAAGAAATGACAGCAGAAGCCATGGCACAGA
CTTGTATAGAGGAGAAAAAATGTACAGAGAGCACCCAGGAGGTACACATACTAAAGTGACACAAAGAGAATGA

Library Parental gene expression (RPM)
bodymap2_adipose 32 .52 RPM
bodymap2_adrenal 52 .44 RPM
bodymap2_brain 53 .42 RPM
bodymap2_breast 38 .11 RPM
bodymap2_colon 51 .59 RPM
bodymap2_heart 20 .47 RPM
bodymap2_kidney 24 .88 RPM
bodymap2_liver 11 .01 RPM
bodymap2_lung 33 .86 RPM
bodymap2_lymph_node 23 .19 RPM
bodymap2_ovary 36 .49 RPM
bodymap2_prostate 41 .29 RPM
bodymap2_skeletal_muscle 17 .77 RPM
bodymap2_testis 70 .85 RPM
bodymap2_thyroid 57 .04 RPM
bodymap2_white_blood_cells 60 .13 RPM



Species Parental gene accession Homology type Retrogenes number
Callithrix jacchus ENSCJAG00000007884 ortholog_one2one 1 retrogene
retro_cjac_2152,
Macaca mulatta ENSMMUG00000023006 ortholog_one2one 1 retrogene
retro_mmul_1967,
Mustela putorius furo ENSMPUG00000013943 possible_ortholog 1 retrogene
retro_mputfur_178,
Mus musculus ENSMUSG00000041777 ortholog_one2one 2 retrogenes
retro_mmus_2064, retro_mmus_3104,
Nomascus leucogenys ENSNLEG00000005869 ortholog_one2one 3 retrogenes
retro_nleu_1540, retro_nleu_2013, retro_nleu_2691,
Pan troglodytes ENSPTRG00000012652 ortholog_one2one 2 retrogenes
retro_ptro_2079, retro_ptro_2306,

# RetrogeneDB ID Identity (%) Coverage (%) ORF conservation Expression evidence RDV
1. retro_hsap_3082 80.69 51.56
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2. retro_hsap_3394 79.31 51.11
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Download FASTA sequences of all ENSG00000138433 retrocopies