Parental gene:

Cir1, ENSMUSG00000041777

Aliases:None
Description:corepressor interacting with RBPJ, 1 [Source:MGI Symbol;Acc:MGI:1914185]
Organism:Mouse (Mus musculus)
Coordinates:2:73283104..73312701(-)


>ENSMUSG00000041777
ATGGGGAAGTCATTCGCCAATTTCATGTGTAAGAAGGACTTCCATCCTGCGTCCAAATCCAACATCAAGAAGGTATGGAT
GGCAGAACAGAAAATATCGTATGATAAAAAGAAACAAGAAGAATTAATGCAACAGTACCTTAAAGAGCAGGAGTCGTATG
ATAACAGATTGCTTATGGGAGATGAACGTGTGAAGAATGGCCTGAATTTCATGTACGAGGCCCCACCAGGAGTTAAGAAA
GAAAACAAAGAGAAAGAAGAAACGGAAGGAGAGACCGAGTACAAGTTTGAATGGCAGAAAGGCGCTCCGAGAGAAAAATA
TGCCAAAGATGACATGAACATCAGAGATCAGCCCTTTGGTATTCAGGTTCGAAATGTAAGGTGTATTAAATGTCACAAGT
GGGGCCATGTGAACACAGATCGAGAGTGTCCCTTGTTTGGTCTTTCTGGGATCAATGCAAGTTCAGTTCCTACTGATGGC
TCAGGGCCGTCGATGCACCCCTCGGAGCTAATAGCGGAGATGAGAAACAGTGGGTTTGCACTGAAACGAAATGTACTGGG
GAGAAACTTGACCGCAAATGATCCATCACAGGACTATGTCGCAAGTGACTGTGAAGAAGACCCTGAAGTTGAGTTCTTAA
AGTCGCTCACCACCAAGCAGAAGCAGAAGCTCCTCAGGAAATTGGATAGACTTGAAAAGAAAAAAAAGAAAAAGAAAAGT
GATAAGAAAAAGAAGAAGTTACAGAAGAGCAAAAATAAACACAAGAAACGTAAAAACAAATCCCCTTCCTCTTCCTCCTC
TTCCTCCTCTTCCTCCTCTTCCTCCTCCTCCTCCTCCTCTTCCTCTTCCTCCTCCTCGGAGACATCAGATAGCAGCAGTG
AGAGTGATAACAAAGAAAAGAAAAGAGAGAAAGAGAAGAGGAAGAAGAAGAAGAAAACCAAATGTTCTGAAAGTAAATCC
AGTGACTGTAAGGAGGACAAGCCTAAGAACATGCTTTACGAAGAACTTTCCAGCAGTCACAGTGACAGGGGAAAAGCCCA
GGAAAAATTAAGGTTTCCAAAACAAGAGAGTTCTGGGGAGAATAGCATGTGGGTCCATTCTGCTTCTGACCGGACATCCA
GAAGCCACCGGCACAGTCCAGAGAAGAAAGGGTCTGACAGAAATCGGGGAATCCGAAGTCGGAGCCGTAGCCGGGCTGAG
AGCAGCCGGCGAAGCAGAAGCAGGAGTCCTTACCGTCAGAAGCACAGGGAGGTGAGGAGCCGGCCACACCGGAGCCCTAG
TGAAGAGCAGAAGGGAAGAAAGGGCACCAGAAGCCATGGTGAAGGTGACCATAGAAGAGAGCACGTGCGCTGA

Library Parental gene expression (RPM)
SRP007412_brain 5 .30 RPM
SRP007412_cerebellum 8 .38 RPM
SRP007412_heart 3 .70 RPM
SRP007412_kidney 6 .87 RPM
SRP007412_liver 4 .67 RPM
SRP007412_testis 27 .76 RPM



Species Parental gene accession Homology type Retrogenes number
Callithrix jacchus ENSCJAG00000007884 ortholog_one2one 1 retrogene
retro_cjac_2152,
Homo sapiens ENSG00000138433 ortholog_one2one 2 retrogenes
retro_hsap_3082, retro_hsap_3394,
Macaca mulatta ENSMMUG00000023006 ortholog_one2one 1 retrogene
retro_mmul_1967,
Mustela putorius furo ENSMPUG00000013943 possible_ortholog 1 retrogene
retro_mputfur_178,
Nomascus leucogenys ENSNLEG00000005869 ortholog_one2one 3 retrogenes
retro_nleu_1540, retro_nleu_2013, retro_nleu_2691,
Pan troglodytes ENSPTRG00000012652 ortholog_one2one 2 retrogenes
retro_ptro_2079, retro_ptro_2306,

# RetrogeneDB ID Identity (%) Coverage (%) ORF conservation Expression evidence RDV
1. retro_mmus_2064 92.21 51.33
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2. retro_mmus_3104 93.53 51.33
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Download FASTA sequences of all ENSMUSG00000041777 retrocopies