RetrogeneDB ID: retro_mputfur_165

Retrocopy location

• Organism: Ferret (Mustela putorius furo)
• Coordinates: GL896962.1:9036132..9036570(+)
• Located in intron of: None

Retrocopy information

• Ensembl ID: ENSMPUG00000019084
• Aliases: None
• Status: KNOWN_PROTEIN_CODING

Parental gene information

• Parental gene symbol: None
• Ensembl ID: ENSMPUG00000018200
• Aliases: None
• Description: None

Sequence

>retro_mputfur_165
ATGAAGCTGTTAGGTCTCAGCATCCTGCGCAAAGAGAAGCCCAACGCAGTGCTGCTCAACATGTCCTCCTTCGGCTTCTT
CCAGAGGTTCAATGTTCAGGAGACTATGTGTGCCCTCTATGTGTGGCACGCCAGTCTTGCAGAAATGGTTGTAATGAACA
GTGACTATTCATTCCATGCGGCTGTGGCCTTGCCAGAGAAGGTACTAGATGAATTCTCCAAGCAGGTCGACAAGACAGAG
TGGCCAGTTGGATCCCTTGCTACCGTCCTAGATGGTTACCTCAGGAGATCCCAGAACCTTGGAGAAACTGACCCCGTGTC
TAAGGCATGGGCTGAGCTGGAGGCAACCAAAATCGTTCTGCACAACACCACGGAGCCTCTGTTAGAGCAAGGGGAGAAGC
TAGATGAACTGGTGTCCAAATCCGAAGTGTTAGAAACA

Alignment

ORF - retro_mputfur_165 Open Reading Frame is conserved.

Retrocopy - Parental Gene Alignment summary:

• Percent Identity: 52.99 %
• Parental protein coverage: 67.68 %
• Number of stop codons detected: 0
• Number of frameshifts detected: 0

Retrocopy - Parental Gene Alignment:

Parental  LIVERSAKGSRASVKEQEYLCHVYVRNDNLAGVVIADSEYPSRVAFTLLEKVLDEFSKHVDRIEWPVGSP
          .....S..G.......QE..C..YV....LA..V...S.Y....A..L.EKVLDEFSK.VD..EWPVGS.
Retrocopy VLLNMSSFGFFQRFNVQETMCALYVWHASLAEMVVMNSDYSFHAAVALPEKVLDEFSKQVDKTEWPVGSL

Parental  ASIHYTALDDYLSRYQNPREADPMTKVQAELDETKIILHNTMESLLERGERLDDLVSKSEVLGT
          A....T.LD.YL.R.QN..E.DP..K..AEL..TKI.LHNT.E.LLE.GE.LD.LVSKSEVL.T
Retrocopy A----TVLDGYLRRSQNLGETDPVSKAWAELEATKIVLHNTTEPLLEQGEKLDELVSKSEVLET

Legend:

• *: Stop codon
• >: Forward frameshift by one nucleotide
• <: Reverse frameshift by one nucleotide

Expression

RNA-Seq

Mustela putorius furo was not studied using RNA-Seq expression data.

ChIP-Seq

Mustela putorius furo was not studied using ChIP-Seq data.

EST

No EST(s) were mapped for retro_mputfur_165 retrocopy.

TSS

Mustela putorius furo was not studied using FANTOM5 data.

Lab

retro_mputfur_165 was not experimentally validated.

Homology

Retrocopy orthology:

Mustela putorius furo does not belong to any of the species groups (eutheria, teleost or neognath), studied for retrocopy-based homology. For more information about studied groups, please go to help section.

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Parental genes homology:

Parental genes homology involve 20 parental genes, and 23 retrocopies.

Species	Parental gene accession	Retrocopies number
Ailuropoda melanoleuca	ENSAMEG00000017618	1 retrocopy	retro_amel_967,
Bos taurus	ENSBTAG00000000274	1 retrocopy	retro_btau_601,
Canis familiaris	ENSCAFG00000002903	1 retrocopy	retro_cfam_740,
Choloepus hoffmanni	ENSCHOG00000011207	1 retrocopy	retro_chof_657,
Callithrix jacchus	ENSCJAG00000008053	2 retrocopies	retro_cjac_2394, retro_cjac_2492,
Dasypus novemcinctus	ENSDNOG00000015173	1 retrocopy	retro_dnov_1364,
Dipodomys ordii	ENSDORG00000016393	1 retrocopy	retro_dord_621,
Erinaceus europaeus	ENSEEUG00000001247	1 retrocopy	retro_eeur_267,
Felis catus	ENSFCAG00000014362	1 retrocopy	retro_fcat_1327,
Homo sapiens	ENSG00000106636	1 retrocopy	retro_hsap_3687,
Gorilla gorilla	ENSGGOG00000027036	1 retrocopy	retro_ggor_2493,
Macropus eugenii	ENSMEUG00000014769	1 retrocopy	retro_meug_2068,
Mustela putorius furo	ENSMPUG00000018200	2 retrocopies	retro_mputfur_141, retro_mputfur_165 ,
Mus musculus	ENSMUSG00000002741	1 retrocopy	retro_mmus_825,
Nomascus leucogenys	ENSNLEG00000003689	1 retrocopy	retro_nleu_2275,
Oryctolagus cuniculus	ENSOCUG00000002981	1 retrocopy	retro_ocun_15,
Pongo abelii	ENSPPYG00000017595	1 retrocopy	retro_pabe_3022,
Pan troglodytes	ENSPTRG00000019141	1 retrocopy	retro_ptro_2500,
Sus scrofa	ENSSSCG00000016750	1 retrocopy	retro_sscr_1063,
Tursiops truncatus	ENSTTRG00000006052	2 retrocopies	retro_ttru_1320, retro_ttru_417,