RetrogeneDB ID: retro_mmur_1221

Retrocopy location

• Organism: Mouse Lemur (Microcebus murinus)
• Coordinates: scaffold_33923:4795..5325(-)
• Located in intron of: None

Retrocopy information

• Ensembl ID: None
• Aliases: None
• Status: NOVEL

Parental gene information

• Parental gene symbol: GEMIN2
• Ensembl ID: ENSMICG00000004811
• Aliases: None
• Description: gem (nuclear organelle) associated protein 2 [Source:HGNC Symbol;Acc:10884]

Sequence

>retro_mmur_1221
AGCATGGCGTGGTTACTAGCAGAGTCTGCAGTGGATGAGTCGATCCCCGGCTGCTGCCGGTGAACACTGCGACTTGACGG
AAGCTTTCTATCCCTCAGTACCTCTGAGGACACCTCAGGAATACCTGAGGCGGGTCCAGATTGAAGCAGCTCAATGTCCA
GATGTTGTAGTAGCTCAAATTGACCCAAAGAAGTTGAAAAGGAAGCAAAGTGTCAATATTTCTCTTTCAGGATGCCAACC
TGCCCCTGAAGGTTATTCCCCAACATTTCAGTGGCAGTAACAAGTAGCACAGTTTTCAACTGTTCGACAAAGTGTGAACA
AACATAGAAGTCACTGGAAATCACAGCAATTTGGATAGTAATGTGACTATGCCAAAATCCGAAGATGAAGAACGCTGGAA
AAAATTTTGTCTGGGTGAAAGATTATGTGCTGAAGGGGCAATTGGACCAGCTACATATGAAAGTCCTGGAATCGATTATG
TACAAATTGGTTTTCCTCCCTTGCTTAGTATTGTTAGCAGAATGAATCAG

Alignment

ORF - retro_mmur_1221 Open Reading Frame is not conserved.

Retrocopy - Parental Gene Alignment summary:

• Percent Identity: 90.61 %
• Parental protein coverage: 63.57 %
• Number of stop codons detected: 1
• Number of frameshifts detected: 3

Retrocopy - Parental Gene Alignment:

Parental  NMAWVPAESAVEELMP-RLLPV-EPCDLTEAFDPSVPPRTPQEYLRRVQIEAAQCPDVVVAQIDPKKLKR
          .MAW..AESAV.E..P.RLLPV.E.CDLTEAF.PSVP.RTPQEYLRRVQIEAAQCPDVVVAQIDPKKLKR
Retrocopy SMAWLLAESAVDESIP<RLLPV<EHCDLTEAFYPSVPLRTPQEYLRRVQIEAAQCPDVVVAQIDPKKLKR

Parental  KQSVNISLSGCQPAPEGYSPTLQWQQQQVAQFSTVRQSVNKHRSHWKSQQ-LDSNVTMPKSEDEEGWKKF
          KQSVNISLSGCQPAPEGYSPT.QW.Q.QVAQFSTVRQSVNKHRSHWKSQQ.LDSNVTMPKSEDEE.WKKF
Retrocopy KQSVNISLSGCQPAPEGYSPTFQW-Q*QVAQFSTVRQSVNKHRSHWKSQQ>LDSNVTMPKSEDEERWKKF

Parental  CLGERLCAEGAIGPATNESPGIDYVQIGFPPLLSIVSRMNQ
          CLGERLCAEGAIGPAT.ESPGIDYVQIGFPPLLSIVSRMNQ
Retrocopy CLGERLCAEGAIGPATYESPGIDYVQIGFPPLLSIVSRMNQ

Legend:

• *: Stop codon
• >: Forward frameshift by one nucleotide
• <: Reverse frameshift by one nucleotide

Expression

RNA-Seq

Microcebus murinus was not studied using RNA-Seq expression data.

ChIP-Seq

Microcebus murinus was not studied using ChIP-Seq data.

EST

No EST(s) were mapped for retro_mmur_1221 retrocopy.

TSS

Microcebus murinus was not studied using FANTOM5 data.

Lab

retro_mmur_1221 was not experimentally validated.

Homology

Retrocopy orthology:

Microcebus murinus does not belong to any of the species groups (eutheria, teleost or neognath), studied for retrocopy-based homology. For more information about studied groups, please go to help section.

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Parental genes homology:

Parental genes homology involve 9 parental genes, and 10 retrocopies.

Species	Parental gene accession	Retrocopies number
Callithrix jacchus	ENSCJAG00000016248	1 retrocopy	retro_cjac_2630,
Dasypus novemcinctus	ENSDNOG00000018278	1 retrocopy	retro_dnov_1040,
Homo sapiens	ENSG00000092208	1 retrocopy	retro_hsap_455,
Gorilla gorilla	ENSGGOG00000016691	2 retrocopies	retro_ggor_1844, retro_ggor_438,
Microcebus murinus	ENSMICG00000004811	1 retrocopy	retro_mmur_1221 ,
Myotis lucifugus	ENSMLUG00000002619	1 retrocopy	retro_mluc_1005,
Mus musculus	ENSMUSG00000060121	1 retrocopy	retro_mmus_354,
Pongo abelii	ENSPPYG00000005764	1 retrocopy	retro_pabe_278,
Pan troglodytes	ENSPTRG00000006291	1 retrocopy	retro_ptro_342,