RetrogeneDB ID: retro_mmul_1577

Retrocopy location

• Organism: Rhesus macaque (Macaca mulatta)
• Coordinates: 20:23087743..23087941(-)
• Located in intron of: None

Retrocopy information

• Ensembl ID: None
• Aliases: None
• Status: NOVEL

Parental gene information

• Parental gene symbol: ACBD7
• Ensembl ID: ENSMMUG00000010587
• Aliases: None
• Description: acyl-CoA-binding domain-containing protein 7 [Source:RefSeq peptide;Acc:NP_001245104]

Sequence

>retro_mmul_1577
GATAATAAAGAACTGAGAAAACTCTGTGGACTTCACAAACAAGCTATAATTGGAGACATTAATATTGAGTATCCTGGAAT
GCTGGATTTAAAGAGCAAGGCCAAATGGGAAGCATGGAACCTCCAAAAAGGGTTGTCGAAGGAAGATGCAATGAATGTCT
CTATTTCTAAGGCAAAGGAGCTGACAGAAAAACAGGGC

Alignment

ORF - retro_mmul_1577 Open Reading Frame is conserved.

Retrocopy - Parental Gene Alignment summary:

• Percent Identity: 77.27 %
• Parental protein coverage: 75.0 %
• Number of stop codons detected: 0
• Number of frameshifts detected: 0

Retrocopy - Parental Gene Alignment:

Parental  DDGELKELYGLYKQAIIGDINIECPGMLDLKGKAKWEAWNLKKGLSTEDAMSAYISKAKELIEKYG
          D..EL..L.GL.KQAIIGDINIE.PGMLDLK.KAKWEAWNL.KGLS.EDAM...ISKAKEL.EK.G
Retrocopy DNKELRKLCGLHKQAIIGDINIEYPGMLDLKSKAKWEAWNLQKGLSKEDAMNVSISKAKELTEKQG

Legend:

• *: Stop codon
• >: Forward frameshift by one nucleotide
• <: Reverse frameshift by one nucleotide

Expression

RNA-Seq

Expression validation based on RNA-Seq data:

Library	Retrocopy expression	Parental gene expression
SRP007412_brain	0.00 RPM	7.73 RPM
SRP007412_brain_prefrontal_cortex	0.00 RPM	6.51 RPM
SRP007412_cerebellum	0.06 RPM	4.39 RPM
SRP007412_heart	0.00 RPM	0.00 RPM
SRP007412_kidney	0.00 RPM	0.23 RPM
SRP007412_liver	0.00 RPM	0.16 RPM
SRP007412_testis	0.00 RPM	0.08 RPM

ChIP-Seq

Macaca mulatta was not studied using ChIP-Seq data.

EST

No EST(s) were mapped for retro_mmul_1577 retrocopy.

TSS

Macaca mulatta was not studied using FANTOM5 data.

Lab

retro_mmul_1577 was not experimentally validated.

Homology

Retrocopy orthology:

Retrocopy retro_mmul_1577 has 5 orthologous retrocopies within eutheria group .

Species	RetrogeneDB ID
Homo sapiens	retro_hsap_1669
Pan troglodytes	retro_ptro_1132
Gorilla gorilla	retro_ggor_1257
Pongo abelii	retro_pabe_1376
Callithrix jacchus	retro_cjac_1017

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Parental genes homology:

Parental genes homology involve 10 parental genes, and 20 retrocopies.

Species	Parental gene accession	Retrocopies number
Callithrix jacchus	ENSCJAG00000009249	1 retrocopy	retro_cjac_1017,
Felis catus	ENSFCAG00000027337	1 retrocopy	retro_fcat_683,
Homo sapiens	ENSG00000176244	2 retrocopies	retro_hsap_1501, retro_hsap_1669,
Gorilla gorilla	ENSGGOG00000015777	3 retrocopies	retro_ggor_1152, retro_ggor_1257, retro_ggor_625,
Macaca mulatta	ENSMMUG00000010587	2 retrocopies	retro_mmul_1577 , retro_mmul_2141,
Macaca mulatta	ENSMMUG00000011126	3 retrocopies	retro_mmul_168, retro_mmul_651, retro_mmul_757,
Nomascus leucogenys	ENSNLEG00000012353	2 retrocopies	retro_nleu_1147, retro_nleu_1720,
Pongo abelii	ENSPPYG00000002111	2 retrocopies	retro_pabe_1252, retro_pabe_1376,
Pan troglodytes	ENSPTRG00000041316	3 retrocopies	retro_ptro_1018, retro_ptro_1132, retro_ptro_530,
Pteropus vampyrus	ENSPVAG00000007153	1 retrocopy	retro_pvam_649,