RetrogeneDB ID: retro_mluc_624

Retrocopy location

• Organism: Microbat (Myotis lucifugus)
• Coordinates: GL429769:5492204..5492951(-)
• Located in intron of: None

Retrocopy information

• Ensembl ID: None
• Aliases: None
• Status: NOVEL

Parental gene information

• Parental gene symbol: ARMC10
• Ensembl ID: ENSMLUG00000006088
• Aliases: None
• Description: None

Sequence

>retro_mluc_624
TCATATGATGATGTCCTAAATGCTGAACAACTTCAGAAACTCCTTTATCTGCTTGAATTAACTGAGGATCCTACTATCAT
TGAAAGAGCTTTGGTCACTCTGGGTAACAATGCAGCCTTTTCAGCTAACCAGGCTATTATTCGTGAATTGGGTGGTATTC
CACTTGTTGGAAGCAAAATCAATGATCCCAACCACAGTATTAAAGAGAAGGCTTTAAATGCACTGAATAACCTGAGTGTG
AATGTTGAAAATCAAATCAAGATAAAGGTATATGTCAATTAAGTCTGTGAGGATGTCTTCTCTGGTTCCCTGAACTCCCC
TGTGCAGTTGATGGGACTGAGATTGCTAATACACATGACAGTTACCAATGACCATCAGCATATGTTTACCAATTACATTA
CAGACTTGTTCCAAGTGCTGCTTTCAGGAAATGGAACCACCAAGGTTCAAGTTTTAAAACTGCTGTTGAATTTGTCTGAA
GATCCAGCCATGACCGAAGGACTATTTGGTGCCCAAGTGGATTCATCATTCCTTTCCCTTTATGATGGCCACATGGCAAA
GGAGCTTCTTCTTTGAGCACTTACACTAATTCAGAATATAAATAACTGCCTCAAAATGGAAGGTCATTTAGCTATTCAGT
CTACTTTCACTCAAGGTTCATTGTTTTTCTTGTTATATGGAGAAGAATGTGCCCAGAAAATGAGAGCATTAGTTAATCAT
CATGATGCAGACGTGAAGAAAAAGGTA

Alignment

ORF - retro_mluc_624 Open Reading Frame is not conserved.

Retrocopy - Parental Gene Alignment summary:

• Percent Identity: 90.36 %
• Parental protein coverage: 93.61 %
• Number of stop codons detected: 2
• Number of frameshifts detected: 0

Retrocopy - Parental Gene Alignment:

Parental  SYDDVLNAEQLQKLLYLLELTEDPAIIERALVTLGNNAAFSANQVIIRELGGIPIVGSKIKDPNHSIKEK
          SYDDVLNAEQLQKLLYLLELTEDP.IIERALVTLGNNAAFSANQ.IIRELGGIP.VGSKI.DPNHSIKEK
Retrocopy SYDDVLNAEQLQKLLYLLELTEDPTIIERALVTLGNNAAFSANQAIIRELGGIPLVGSKINDPNHSIKEK

Parental  ALNALSNLSVNVENQIKIKVYVNQVCEDVLSGPLNSPVQLAGLRLLTNMTVTNDHQHMFTNYITDLFQVL
          ALNAL.NLSVNVENQIKIKVYVN.VCEDV.SG.LNSPVQL.GLRLL..MTVTNDHQHMFTNYITDLFQVL
Retrocopy ALNALNNLSVNVENQIKIKVYVN*VCEDVFSGSLNSPVQLMGLRLLIHMTVTNDHQHMFTNYITDLFQVL

Parental  LAGNGTTKVQVLKLLLNLSENPAMTEGLLGAQVDSSFLSLYDGHVAKEILLRALTLFQNINNCLKKEGHL
          L.GNGTTKVQVLKLLLNLSE.PAMTEGL.GAQVDSSFLSLYDGH.AKE.LL.ALTL.QNINNCLK.EGHL
Retrocopy LSGNGTTKVQVLKLLLNLSEDPAMTEGLFGAQVDSSFLSLYDGHMAKELLL*ALTLIQNINNCLKMEGHL

Parental  TVQPTFTQGSLFFLLYGEECAQKMRALVNHHDADVKEKL
          ..Q.TFTQGSLFFLLYGEECAQKMRALVNHHDADVK.K.
Retrocopy AIQSTFTQGSLFFLLYGEECAQKMRALVNHHDADVKKKV

Legend:

• *: Stop codon
• >: Forward frameshift by one nucleotide
• <: Reverse frameshift by one nucleotide

Expression

RNA-Seq

Myotis lucifugus was not studied using RNA-Seq expression data.

ChIP-Seq

Myotis lucifugus was not studied using ChIP-Seq data.

EST

Myotis lucifugus was not studied using EST data.

TSS

Myotis lucifugus was not studied using FANTOM5 data.

Lab

retro_mluc_624 was not experimentally validated.

Homology

Retrocopy orthology:

Myotis lucifugus does not belong to any of the species groups (eutheria, teleost or neognath), studied for retrocopy-based homology. For more information about studied groups, please go to help section.

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Parental genes homology:

Parental genes homology involve 9 parental genes, and 14 retrocopies.

Species	Parental gene accession	Retrocopies number
Canis familiaris	ENSCAFG00000004247	1 retrocopy	retro_cfam_1264,
Choloepus hoffmanni	ENSCHOG00000002095	1 retrocopy	retro_chof_2665,
Callithrix jacchus	ENSCJAG00000021208	2 retrocopies	retro_cjac_1758, retro_cjac_2104,
Cavia porcellus	ENSCPOG00000019936	1 retrocopy	retro_cpor_1022,
Homo sapiens	ENSG00000170632	1 retrocopy	retro_hsap_2815,
Microcebus murinus	ENSMICG00000010160	1 retrocopy	retro_mmur_638,
Myotis lucifugus	ENSMLUG00000006088	3 retrocopies	retro_mluc_1587, retro_mluc_1825, retro_mluc_624 ,
Mus musculus	ENSMUSG00000038525	3 retrocopies	retro_mmus_1292, retro_mmus_2256, retro_mmus_969,
Vicugna pacos	ENSVPAG00000008914	1 retrocopy	retro_vpac_19,