RetrogeneDB ID: retro_mluc_444

Retrocopy location

• Organism: Microbat (Myotis lucifugus)
• Coordinates: AAPE02065352:4726..6399(+)
• Located in intron of: None

Retrocopy information

• Ensembl ID: ENSMLUG00000029421
• Aliases: None
• Status: KNOWN_PSEUDOGENE

Parental gene information

• Parental gene symbol: None
• Ensembl ID: ENSMLUG00000003037
• Aliases: None
• Description: Glucose-6-phosphate isomerase [Source:UniProtKB/TrEMBL;Acc:G1NZ86]

Sequence

>retro_mluc_444
ATGGCCGCGCTCACCCAGAACCCGCAGTTCCAGCAGCTCCAGGAATGGCACCGCAAGCACGGCTCTGAGCTCAACCTGCG
CCGCCTTTTCGAGGGGGACAAGGAACGCTTCAACCGCTTCAGCTTGAACCTCGATACCAGCCATGGGCGTATTCTGGTGG
ATTATTCCAAGAACCTGGTGACGGAGGGTGTGATGAAGATGCTGGTGGACCTGGCCAAGTCCAGGGGTGTGGAGGCCGCC
CGGGAGAACATGTTCAACGGCGAGAAGATCAATTTCACTGAGAATCGGGCAGTGCTGCATGTGGCCTGCGGAACCGGTCA
AACACACCCATTCTGGTGGATGGCAAGGATGTGATGCCGGAGGTCAACAGGGTCCTAGAGAAGATGAAGTCTTTCTGCCA
GCGCGTCCGAAGTGGTGACTGGAAGGGGTACTCAGGCAAGTCCATCACAGACGTCATCAACATCGGCATCGGGGGCTCGG
ACCTGGGACCCCTCATGGTGACTGAAGCCCTTAAGCCGTACTCTTCGGGAGGACCCCGTGTCTGGTTTGTCTCCAACATT
GATGGGACCCACATTGCCAAAACCTTGGCCAACCTGAACCCTGATTCCTCCCTGTTCATCATCGCTTCCAAGACCTTTAC
CACCCAGGAGACCATCACGAACGCAGAGACGGCAAAGGAGTGGCTCCTCCAGTCGTCCAAGGATCCTTCTTCTGTTGCGA
AGCACTTTGTTGCCCTGTCTACTAATACGACCAAAGTGAAGGAGTTTGGAATTGACCCTCAAAACATGTTCGAGTTCTGG
GATTGGGTAGGAGGACGCTACTCGCTATGGTCAGCCATTGGACTCTCCATTGCTCTGCACGTGGGATTTGACAACTTCGA
GCAGCTGCTCTCGGGGGCTCACTGGATGGATCAGCACTTCCGCAAGACGCCCCTGGAGAAGAATGCCCCCGTCCTGCTGG
CTTTGTTGGGTGTCTGGTACATCAACTGCTTTGGGTGTGAGACACATGCCATGCTGCCCTATGACCAGTACCTGCACCGC
TTTGCTGCCTACTTCCAGCAGGGTGACATGGAGTCCAATGGAAAGTACATCACCAAGTCCGGTACCCGTGTGGACCACCA
GACGGGCCCCATTGTGTGGGGGGAGCCAGGGACCAATGGCCAGCATGCCTTCTACCAGCTCATCCACCAAGGCACCAAGA
TGATACCTTGTGACTTCCTCATCCCGGTTCAAACCCAGCACCCAATAAGGAAGGGTCTGCATCACAAGATCCTCCTGGCC
AACTTCTTGGCCCAGACTGAGGCCCTGATGAGGGGGAAGACGACAGAGGAGGCTCGGAAGGAGCTCCAGGCTGCAGGAAG
GGGCCCAGAGGACCTGGAGAAGCTGTTGCCACACAAGGTCTTTGAAGGAAATCGTCCAACCAACTCTATTATGTTTACCA
TGCTCACACCATTCATTCTTGGAGCCTTAATTGCCATGTATGAGCACAAGATCTTTGTTCAGGGCATCATCTGGGACATC
AACAGCTTTGACCAATGGGGAGTGGAGCTGGGAAAGCAGCTGGCTAAGCAAATTGAGCCTGAGCTTGATGGCAGCAGCCC
AGTGACCTCTCACGATTCTTCCACCAATGGGCTGATCAACTTCATCAAGCAGGAGTGTACCGCCAGAATCCAA

Alignment

ORF - retro_mluc_444 Open Reading Frame is not conserved.

Retrocopy - Parental Gene Alignment summary:

• Percent Identity: 99.82 %
• Parental protein coverage: 100.0 %
• Number of stop codons detected: 0
• Number of frameshifts detected: 1

Retrocopy - Parental Gene Alignment:

Parental  MAALTQNPQFQQLQEWHRKHGSELNLRRLFEGDKERFNRFSLNLDTSHGRILVDYSKNLVTEGVMKMLVD
          MAALTQNPQFQQLQEWHRKHGSELNLRRLFEGDKERFNRFSLNLDTSHGRILVDYSKNLVTEGVMKMLVD
Retrocopy MAALTQNPQFQQLQEWHRKHGSELNLRRLFEGDKERFNRFSLNLDTSHGRILVDYSKNLVTEGVMKMLVD

Parental  LAKSRGVEAARENMFNGEKINFTENRAVLHVA-LRNRSNTPILVDGKDVMPEVNRVLEKMKSFCQRVRSG
          LAKSRGVEAARENMFNGEKINFTENRAVLHVA.LRNRSNTPILVDGKDVMPEVNRVLEKMKSFCQRVRSG
Retrocopy LAKSRGVEAARENMFNGEKINFTENRAVLHVA<LRNRSNTPILVDGKDVMPEVNRVLEKMKSFCQRVRSG

Parental  DWKGYSGKSITDVINIGIGGSDLGPLMVTEALKPYSSGGPRVWFVSNIDGTHIAKTLANLNPDSSLFIIA
          DWKGYSGKSITDVINIGIGGSDLGPLMVTEALKPYSSGGPRVWFVSNIDGTHIAKTLANLNPDSSLFIIA
Retrocopy DWKGYSGKSITDVINIGIGGSDLGPLMVTEALKPYSSGGPRVWFVSNIDGTHIAKTLANLNPDSSLFIIA

Parental  SKTFTTQETITNAETAKEWLLQSSKDPSSVAKHFVALSTNTTKVKEFGIDPQNMFEFWDWVGGRYSLWSA
          SKTFTTQETITNAETAKEWLLQSSKDPSSVAKHFVALSTNTTKVKEFGIDPQNMFEFWDWVGGRYSLWSA
Retrocopy SKTFTTQETITNAETAKEWLLQSSKDPSSVAKHFVALSTNTTKVKEFGIDPQNMFEFWDWVGGRYSLWSA

Parental  IGLSIALHVGFDNFEQLLSGAHWMDQHFRKTPLEKNAPVLLALLGVWYINCFGCETHAMLPYDQYLHRFA
          IGLSIALHVGFDNFEQLLSGAHWMDQHFRKTPLEKNAPVLLALLGVWYINCFGCETHAMLPYDQYLHRFA
Retrocopy IGLSIALHVGFDNFEQLLSGAHWMDQHFRKTPLEKNAPVLLALLGVWYINCFGCETHAMLPYDQYLHRFA

Parental  AYFQQGDMESNGKYITKSGTRVDHQTGPIVWGEPGTNGQHAFYQLIHQGTKMIPCDFLIPVQTQHPIRKG
          AYFQQGDMESNGKYITKSGTRVDHQTGPIVWGEPGTNGQHAFYQLIHQGTKMIPCDFLIPVQTQHPIRKG
Retrocopy AYFQQGDMESNGKYITKSGTRVDHQTGPIVWGEPGTNGQHAFYQLIHQGTKMIPCDFLIPVQTQHPIRKG

Parental  LHHKILLANFLAQTEALMRGKTTEEARKELQAAGRGPEDLEKLLPHKVFEGNRPTNSIMFTMLTPFILGA
          LHHKILLANFLAQTEALMRGKTTEEARKELQAAGRGPEDLEKLLPHKVFEGNRPTNSIMFTMLTPFILGA
Retrocopy LHHKILLANFLAQTEALMRGKTTEEARKELQAAGRGPEDLEKLLPHKVFEGNRPTNSIMFTMLTPFILGA

Parental  LIAMYEHKIFVQGIIWDINSFDQWGVELGKQLAKQIEPELDGSSPVTSHDSSTNGLINFIKQECTARIQ
          LIAMYEHKIFVQGIIWDINSFDQWGVELGKQLAKQIEPELDGSSPVTSHDSSTNGLINFIKQECTARIQ
Retrocopy LIAMYEHKIFVQGIIWDINSFDQWGVELGKQLAKQIEPELDGSSPVTSHDSSTNGLINFIKQECTARIQ

Legend:

• *: Stop codon
• >: Forward frameshift by one nucleotide
• <: Reverse frameshift by one nucleotide

Expression

RNA-Seq

Myotis lucifugus was not studied using RNA-Seq expression data.

ChIP-Seq

Myotis lucifugus was not studied using ChIP-Seq data.

EST

Myotis lucifugus was not studied using EST data.

TSS

Myotis lucifugus was not studied using FANTOM5 data.

Lab

retro_mluc_444 was not experimentally validated.

Homology

Retrocopy orthology:

Myotis lucifugus does not belong to any of the species groups (eutheria, teleost or neognath), studied for retrocopy-based homology. For more information about studied groups, please go to help section.

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Parental genes homology:

Parental genes homology involve 8 parental genes, and 13 retrocopies.

Species	Parental gene accession	Retrocopies number
Canis familiaris	ENSCAFG00000007303	3 retrocopies	retro_cfam_1715, retro_cfam_1935, retro_cfam_2101,
Cavia porcellus	ENSCPOG00000008562	1 retrocopy	retro_cpor_983,
Macropus eugenii	ENSMEUG00000010190	4 retrocopies	retro_meug_1022, retro_meug_1281, retro_meug_559, retro_meug_991,
Microcebus murinus	ENSMICG00000011620	1 retrocopy	retro_mmur_1496,
Myotis lucifugus	ENSMLUG00000003037	1 retrocopy	retro_mluc_444 ,
Macaca mulatta	ENSMMUG00000005880	1 retrocopy	retro_mmul_2086,
Mustela putorius furo	ENSMPUG00000007520	1 retrocopy	retro_mputfur_1370,
Mus musculus	ENSMUSG00000036427	1 retrocopy	retro_mmus_237,