RetrogeneDB ID: retro_mmur_1496

Retrocopy location

• Organism: Mouse Lemur (Microcebus murinus)
• Coordinates: scaffold_7004:3578..4916(-)
• Located in intron of: None

Retrocopy information

• Ensembl ID: None
• Aliases: None
• Status: NOVEL

Parental gene information

• Parental gene symbol: GPI
• Ensembl ID: ENSMICG00000011620
• Aliases: None
• Description: glucose-6-phosphate isomerase [Source:HGNC Symbol;Acc:4458]

Sequence

>retro_mmur_1496
ATCGTGTGGACGCAAGATGTGATGCCGGATGTGAACAGGGTTCTGGACAAGATGAAAACTTTCTGCCAGCGTGTGCGGAG
CGGTGACTGGAAGGGGTACACTGGCAAGGCCATCACGGACGTCATCAACATCGGCATCGGTGGCTCTGACCTGGGACCCC
TCATTGTGACCGAAGCCCTGAAGCTGTACTCCTCAGGAGGTCCCCGGGTCTGGTTTGTCTCCAACATCGATGGGACCCAC
ATTGCCAAAACCCTGACCAACCTGAACCCTGAGTCCTCCCTGTTCATCATCGCCTCCAAGACCTTTACCACGCAGGAGAC
CATCACAGACGCAGAGACGGCGAAGGAGTGGTTTCTCCTGTCGGCCAAGGATCCTTCTGCAGTCGCGAAGCACTTTGTTG
CCCTGTCCACCAACATGACCAAAGTGAAGGAGTTTGGAATTGACCCTCAGAACATGTTCGAGTTCTGGGATTGGGTAGGA
GGACGCTACTCCCTCTGGTCGGCCATCGGACTCTCCATCGCCCTGCACGTGGGTTTTGACAACTTCGAGCAGCTGCTCTC
GGGGGCTCACTGGATGGACCAGCACTTCCGCACAGCCCCGCTGGAGAAGAATGCCCCTGTCCTGCTGGCCCTGCTGGGCA
TCTGGTACATCAACTTCTTCGGGTGCGAGACGCATGCCATCCTGCCCTACGACCAGTACATGCACCGCTTTGCTGCTTAC
TTCCAGCAGGGCGACATGGAGTCCAATGGCAAGTACATCACCAAGTCCGGCATCCGTGTGGACCACCAGACAGGCCCCAT
CGTGTGTGGGGAGCCAGGGACTAATGGCCAGCATGCCTTCTACCAGCTCATCCACCAAGGCACCAAGATGATCCCCTGTG
ACTTTCTCATCCCAGTCCAGACCCAGCACCCAATACGGAAGGGTTTGCATCACAAGATCCTCCTGGCCAACTTCTTGGCC
CAGACAGAAGCCCTGATGAAGGGGAAATCTGTGGAGGAGGCCCAGAAGGAGCTCCATGTTGCAGGAAAGAGTCCAGAGGA
GTTAGAGAAGCTGTTGCTGCACAAGGTCTTTGAAGGAAATCGCCCAACCAACTCTATTATGTTCACCAAGCTCACACCCT
TCATTCTTGGAGCCTTGATTGCGATGTACGAGCACAAGATCTTTGTCCAGGGCATCATCTGGGACATCAACAGCTTTGAC
CAGTGGGGAGTGGAGCTGGGGAAGCAGCTGGCTAAGAAAATTGAGCCCGAGCTTGATGGCAATGCGCCGGTGACCTCTCA
CGATTCTTCCACCAATGGGCTGATCAGCTTCATCAAGCAGCAGCGCGAGGCCAGAATC

Alignment

ORF - retro_mmur_1496 Open Reading Frame is conserved.

Retrocopy - Parental Gene Alignment summary:

• Percent Identity: 96.86 %
• Parental protein coverage: 86.43 %
• Number of stop codons detected: 0
• Number of frameshifts detected: 0

Retrocopy - Parental Gene Alignment:

Parental  VVDGKDVMPEVNRVLDKMKTFCQRVRSGDWKGYTGKAITDVINIGIGGSDLGPLMVTEALKPYSSGGPRV
          .V...DVMP.VNRVLDKMKTFCQRVRSGDWKGYTGKAITDVINIGIGGSDLGPL.VTEALK.YSSGGPRV
Retrocopy IVWTQDVMPDVNRVLDKMKTFCQRVRSGDWKGYTGKAITDVINIGIGGSDLGPLIVTEALKLYSSGGPRV

Parental  WFVSNIDGTHIAKTLTNLNPESSLFIIASKTFTTQETITNAETAKEWFLLSAKDPSAVAKHFVALSTNTT
          WFVSNIDGTHIAKTLTNLNPESSLFIIASKTFTTQETIT.AETAKEWFLLSAKDPSAVAKHFVALSTN.T
Retrocopy WFVSNIDGTHIAKTLTNLNPESSLFIIASKTFTTQETITDAETAKEWFLLSAKDPSAVAKHFVALSTNMT

Parental  KVKEFGIDPQNMFEFWDWVGGRYSLWSAIGLSIALHVGFDNFEQLLSGAHWMDQHFRTAPLEKNAPVLLA
          KVKEFGIDPQNMFEFWDWVGGRYSLWSAIGLSIALHVGFDNFEQLLSGAHWMDQHFRTAPLEKNAPVLLA
Retrocopy KVKEFGIDPQNMFEFWDWVGGRYSLWSAIGLSIALHVGFDNFEQLLSGAHWMDQHFRTAPLEKNAPVLLA

Parental  LLGIWYINFFGCETHAMLPYDQYMHRFAAYFQQGDMESNGKYITKSGIRVDHQTGPIVWGEPGTNGQHAF
          LLGIWYINFFGCETHA.LPYDQYMHRFAAYFQQGDMESNGKYITKSGIRVDHQTGPIV.GEPGTNGQHAF
Retrocopy LLGIWYINFFGCETHAILPYDQYMHRFAAYFQQGDMESNGKYITKSGIRVDHQTGPIVCGEPGTNGQHAF

Parental  YQLIHQGTKMIPCDFLIPVQTQHPIRKGLHHKILLANFLAQTEALMKGKSVEEARKELHVAGKSPEELEK
          YQLIHQGTKMIPCDFLIPVQTQHPIRKGLHHKILLANFLAQTEALMKGKSVEEA.KELHVAGKSPEELEK
Retrocopy YQLIHQGTKMIPCDFLIPVQTQHPIRKGLHHKILLANFLAQTEALMKGKSVEEAQKELHVAGKSPEELEK

Parental  LLPHKVFEGNRPTNSIMFTKLTPFILGALIAMYEHKIFVQGIIWDINSFDQWGVELGKQLAKKIEPELDG
          LL.HKVFEGNRPTNSIMFTKLTPFILGALIAMYEHKIFVQGIIWDINSFDQWGVELGKQLAKKIEPELDG
Retrocopy LLLHKVFEGNRPTNSIMFTKLTPFILGALIAMYEHKIFVQGIIWDINSFDQWGVELGKQLAKKIEPELDG

Parental  NAPVTSHDSSTNGLISFIKQHREARI
          NAPVTSHDSSTNGLISFIKQ.REARI
Retrocopy NAPVTSHDSSTNGLISFIKQQREARI

Legend:

• *: Stop codon
• >: Forward frameshift by one nucleotide
• <: Reverse frameshift by one nucleotide

Expression

RNA-Seq

Microcebus murinus was not studied using RNA-Seq expression data.

ChIP-Seq

Microcebus murinus was not studied using ChIP-Seq data.

EST

No EST(s) were mapped for retro_mmur_1496 retrocopy.

TSS

Microcebus murinus was not studied using FANTOM5 data.

Lab

retro_mmur_1496 was not experimentally validated.

Homology

Retrocopy orthology:

Microcebus murinus does not belong to any of the species groups (eutheria, teleost or neognath), studied for retrocopy-based homology. For more information about studied groups, please go to help section.

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Parental genes homology:

Parental genes homology involve 8 parental genes, and 13 retrocopies.

Species	Parental gene accession	Retrocopies number
Canis familiaris	ENSCAFG00000007303	3 retrocopies	retro_cfam_1715, retro_cfam_1935, retro_cfam_2101,
Cavia porcellus	ENSCPOG00000008562	1 retrocopy	retro_cpor_983,
Macropus eugenii	ENSMEUG00000010190	4 retrocopies	retro_meug_1022, retro_meug_1281, retro_meug_559, retro_meug_991,
Microcebus murinus	ENSMICG00000011620	1 retrocopy	retro_mmur_1496 ,
Myotis lucifugus	ENSMLUG00000003037	1 retrocopy	retro_mluc_444,
Macaca mulatta	ENSMMUG00000005880	1 retrocopy	retro_mmul_2086,
Mustela putorius furo	ENSMPUG00000007520	1 retrocopy	retro_mputfur_1370,
Mus musculus	ENSMUSG00000036427	1 retrocopy	retro_mmus_237,