RetrogeneDB ID: retro_mluc_1194

Retrocopy location

• Organism: Microbat (Myotis lucifugus)
• Coordinates: GL429805:861969..862698(-)
• Located in intron of: None

Retrocopy information

• Ensembl ID: ENSMLUG00000007437
• Aliases: None
• Status: KNOWN_PSEUDOGENE

Parental gene information

• Parental gene symbol: TPGS2
• Ensembl ID: ENSMLUG00000001739
• Aliases: None
• Description: None

Sequence

>retro_mluc_1194
AAAAAAATAACTGTGCTGCCTGAGGATGTCAAGAATTTTTACCTGGTGACCAATGGCTTCCACATGACATGGAGTGTGAA
GCTGGATGAGCACACCATCCCATTGGGCAACATGGCAATTAATAGTATCACAAAACTGACTCAACTCAGCCAGTCTTCCA
TGTACTCACTTCCTAATGCACCAACTCTGGCTGACCTGGAGGACAATACACAAGAAGCCATTGAGAACCAGCCAGAGAAG
CCCCACTTTGACTCTCACACTGTGATATTTGAGCTGGACCTTTGCAACAGGAATGGGAAGGTTTGCCTCATCCACAAAAA
AGGGAAACCAGCATTAGCACAAGACACTGAGATCTGGTTCCTGGACAGAGCACTGTACTGGCATTTCCTCACAGATACCT
TTACCGCCTATTACCGCCTGCTCCTCATGCACCTGGGCCTGCCCCAGTGGCATTACGCCTTCACCAGCTATGGCATCAGC
CCACAGGCCAAGCAATGGTTCAACATGTATAAGCCCATCACCTACAACACGAGCCTGCTCACTGAAGAGACTGACTCCTT
TGTGAACAAGCTGGATCCCAGCAAAGTGTTCAAGAGCAAGAACAAGATCTTAATCCCCAAAAAGAAAGAGCCTGTTCCAT
CTGCAGGCAGCCAGAAAGGGCCCTTGGGTCCTCCCTCCAACCCCTCCACCCCTAAATCCTCCTCTGGCTCTGGAAACCCT
GTGCGGAAA

Alignment

ORF - retro_mluc_1194 Open Reading Frame is conserved.

Retrocopy - Parental Gene Alignment summary:

• Percent Identity: 92.18 %
• Parental protein coverage: 81.27 %
• Number of stop codons detected: 0
• Number of frameshifts detected: 0

Retrocopy - Parental Gene Alignment:

Parental  KNNCVLPEDIKNFYLVTNGFHMTWSVKLDEHTIPLGNMAINSITKLTQLNQSSMYSLPNAPTLADLEDDI
          K...VLPED.KNFYLVTNGFHMTWSVKLDEHTIPLGNMAINSITKLTQL.QSSMYSLPNAPTLADLED..
Retrocopy KKITVLPEDVKNFYLVTNGFHMTWSVKLDEHTIPLGNMAINSITKLTQLSQSSMYSLPNAPTLADLEDNT

Parental  QEASENQPEKPHFDSRSVIFELDHCNGNGKVCLVYKKGKPALAQDTEIWFLDRALYWHFLTDTFTAYYRL
          QEA.ENQPEKPHFDS..VIFELD.CN.NGKVCL..KKGKPALAQDTEIWFLDRALYWHFLTDTFTAYYRL
Retrocopy QEAIENQPEKPHFDSHTVIFELDLCNRNGKVCLIHKKGKPALAQDTEIWFLDRALYWHFLTDTFTAYYRL

Parental  LLTHLGLPQWQYAFTSYGISPQAKQWFNMYKPITYNTSLLTEETDSFVNKLDPSKVFKSKNKILIPKKKG
          LL.HLGLPQW.YAFTSYGISPQAKQWFNMYKPITYNTSLLTEETDSFVNKLDPSKVFKSKNKILIPKKK.
Retrocopy LLMHLGLPQWHYAFTSYGISPQAKQWFNMYKPITYNTSLLTEETDSFVNKLDPSKVFKSKNKILIPKKKE

Parental  PVPSAGSQKGPSGPPSTPSTPKSSSGSGNPVRK
          PVPSAGSQKGP.GPPS.PSTPKSSSGSGNPVRK
Retrocopy PVPSAGSQKGPLGPPSNPSTPKSSSGSGNPVRK

Legend:

• *: Stop codon
• >: Forward frameshift by one nucleotide
• <: Reverse frameshift by one nucleotide

Expression

RNA-Seq

Myotis lucifugus was not studied using RNA-Seq expression data.

ChIP-Seq

Myotis lucifugus was not studied using ChIP-Seq data.

EST

Myotis lucifugus was not studied using EST data.

TSS

Myotis lucifugus was not studied using FANTOM5 data.

Lab

retro_mluc_1194 was not experimentally validated.

Homology

Retrocopy orthology:

Myotis lucifugus does not belong to any of the species groups (eutheria, teleost or neognath), studied for retrocopy-based homology. For more information about studied groups, please go to help section.

---

Parental genes homology:

Parental genes homology involve 11 parental genes, and 17 retrocopies.

Species	Parental gene accession	Retrocopies number
Canis familiaris	ENSCAFG00000017766	3 retrocopies	retro_cfam_355, retro_cfam_457, retro_cfam_626,
Choloepus hoffmanni	ENSCHOG00000007960	1 retrocopy	retro_chof_1642,
Erinaceus europaeus	ENSEEUG00000005257	3 retrocopies	retro_eeur_208, retro_eeur_324, retro_eeur_516,
Myotis lucifugus	ENSMLUG00000001739	1 retrocopy	retro_mluc_1194 ,
Mustela putorius furo	ENSMPUG00000001097	2 retrocopies	retro_mputfur_1622, retro_mputfur_507,
Mus musculus	ENSMUSG00000024269	1 retrocopy	retro_mmus_2648,
Otolemur garnettii	ENSOGAG00000008218	1 retrocopy	retro_ogar_686,
Rattus norvegicus	ENSRNOG00000014957	1 retrocopy	retro_rnor_2961,
Sus scrofa	ENSSSCG00000026953	1 retrocopy	retro_sscr_590,
Tarsius syrichta	ENSTSYG00000005299	2 retrocopies	retro_tsyr_1161, retro_tsyr_512,
Tursiops truncatus	ENSTTRG00000007153	1 retrocopy	retro_ttru_1112,